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Gene: PRDM9 (PR/SET domain 9) Homo sapiens
Symbol: PRDM9
Name: PR/SET domain 9
Description: Exhibits DNA binding activity and histone-lysine N-methyltransferase activity. Involved in several processes, including histone lysine methylation; nucleosome positioning; and positive regulation of organelle organization. Predicted to localize to the nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: histone methyl transferase; histone-lysine N-methyltransferase PRDM9; KMT8B; MEISETZ; minisatellite binding protein 3 (115kD); minisatellite binding protein 3, 115kDa; MSBP3; PFM6; PR domain 9; PR domain containing 9; PR domain zinc finger protein 9; PR domain-containing protein 9; PR-domain containing protein 9; PRMD9; protein-lysine N-methyltransferase PRDM9; ZNF899
Mus musculus (house mouse) : Prdm9 (PR domain containing 9)  MGI  Alliance
Rattus norvegicus (Norway rat) : Prdm9 (PR/SET domain 9)  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM9 (PR/SET domain 9)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38 Ensembl523,443,586 - 23,528,597 (+)Ensembl
GRCh38523,507,155 - 23,528,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37523,507,724 - 23,528,706 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36523,543,481 - 23,564,463 (+)NCBINCBI36hg18NCBI36
Build 34523,558,478 - 23,564,463NCBI
Celera523,396,917 - 23,417,900 (+)NCBI
Cytogenetic Map5p14.2NCBI
HuRef523,474,996 - 23,495,995 (+)NCBIHuRef
CHM1_1523,507,786 - 23,528,212 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
Nomenclature History
More on PRDM9
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1349245
Created: 2005-03-08
Species: Homo sapiens
Last Modified: 2019-12-25
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.