![]() |
Cellular Component
Molecular Function
![]() |
Create Name: | |
Description: |
![]() |
Save what matters to you |
{{ loginError }} |
Sign in with your RGD account |
Create New Account | Recover Password |
Analyze GeneStrainQTL List |
![]() Gene Annotator (Functional Annotation) unavailable |
![]() Gene Annotator (Annotation Distribution) unavailable |
![]() Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
![]() InterViewer (Protein-Protein Interactions) unavailable |
![]() Gviewer (Genome Viewer) unavailable |
![]() Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
![]() Gene Annotator (Annotation Comparison) unavailable |
![]() OLGA (Gene List Generator) unavailable |
![]() |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
![]() MOET (Multi-Ontology Enrichement) unavailable |
![]() GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
![]() Biological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | long-chain fatty acid transport | | TAS | | 2290271 | | Reactome | Reactome:R-HSA-804914 | |
|
|
|
|
|
|
|
LCN12 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lcn12 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lcn12 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lcn12 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LCN12 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LCN12 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Lcn12 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LCN12 (Sus scrofa - pig) |
|
SHGC-147801 |
|
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_178536 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006717065 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011518560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011518561 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011518562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017014631 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017014632 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_001746278 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_001746279 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_001746280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AI681012 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AL807752 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY301272 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC031600 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC041168 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX281250 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471090 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GQ891520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_178536 ⟹ NP_848631 | ||||||||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||||||||
Sequence: |
GCAGCTGCCAGGATGAGGCTGCTGTGTGGCCTGTGGCTGTGGCTCTCCTTGCTGAAAGTCCTGChide sequence |
RefSeq Acc Id: | XM_006717065 ⟹ XP_006717128 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GCCAGGAGTTCAAGATCTGACTGGGTGGGCAACATAGTGAGACCTCATCTCTATTTAAAAAAAAhide sequence |
RefSeq Acc Id: | XM_011518560 ⟹ XP_011516862 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GGCTTGAGAGATCCTCCCACCTTGGCCCCCCAAAGTGCTGGGATTATAGGCATGAGCCTCTGTGhide sequence |
RefSeq Acc Id: | XM_011518561 ⟹ XP_011516863 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
CCTGAGGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAhide sequence |
RefSeq Acc Id: | XM_011518562 ⟹ XP_011516864 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GCAATCCTCCCACCTCAGCCTCTCAAGTAGCTGGGACCACAGCTGCCAGGATGAGGCTGCTGTGhide sequence |
RefSeq Acc Id: | XM_017014631 ⟹ XP_016870120 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
CTGAGGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAGhide sequence |
RefSeq Acc Id: | XM_017014632 ⟹ XP_016870121 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAGGCAGhide sequence |
RefSeq Acc Id: | XR_001746278 | |||||||||
RefSeq Status: | ||||||||||
Type: | NON-CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
CCTGAGGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAhide sequence |
RefSeq Acc Id: | XR_001746279 | |||||||||
RefSeq Status: | ||||||||||
Type: | NON-CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
CCTGAGGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAhide sequence |
RefSeq Acc Id: | XR_001746280 | |||||||||
RefSeq Status: | ||||||||||
Type: | NON-CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GGAGAGCCCACACCAAGCCTGCCCTGGGCACCACCTCTCCTGCCAGTCCTGAGGAGGGAGGCAGhide sequence |
Protein RefSeqs | NP_848631 | (Get FASTA) | NCBI Sequence Viewer |
XP_006717128 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011516862 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011516863 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011516864 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016870120 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016870121 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH41168 | (Get FASTA) | NCBI Sequence Viewer |
AAQ81977 | (Get FASTA) | NCBI Sequence Viewer | |
ADO22382 | (Get FASTA) | NCBI Sequence Viewer | |
EAW88317 | (Get FASTA) | NCBI Sequence Viewer | |
EAW88318 | (Get FASTA) | NCBI Sequence Viewer | |
EAW88319 | (Get FASTA) | NCBI Sequence Viewer | |
EAW88320 | (Get FASTA) | NCBI Sequence Viewer | |
Q6JVE5 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_848631 ⟸ NM_178536 |
- Peptide Label: | precursor |
- UniProtKB: | Q6JVE5 (UniProtKB/Swiss-Prot) |
- Sequence: |
MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFhide sequence |
RefSeq Acc Id: | XP_006717128 ⟸ XM_006717065 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8IW14 (UniProtKB/TrEMBL) |
- Sequence: |
MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFhide sequence |
RefSeq Acc Id: | XP_011516864 ⟸ XM_011518562 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8IW14 (UniProtKB/TrEMBL) |
- Sequence: |
MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFhide sequence |
RefSeq Acc Id: | XP_011516862 ⟸ XM_011518560 |
- Peptide Label: | isoform X2 |
- Sequence: |
MRRRGGRWTWGPLLPHLAGTQETAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNhide sequence |
RefSeq Acc Id: | XP_011516863 ⟸ XM_011518561 |
- Peptide Label: | isoform X1 |
- Sequence: |
MCMKRWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGhide sequence |
RefSeq Acc Id: | XP_016870120 ⟸ XM_017014631 |
- Peptide Label: | isoform X4 |
- Sequence: |
MCMKRWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGhide sequence |
RefSeq Acc Id: | XP_016870121 ⟸ XM_017014632 |
- Peptide Label: | isoform X5 |
- Sequence: |
MCMKRWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGhide sequence |
RGD ID: | 7216733 | |||||||||
Promoter ID: | EPDNEW_H14112 | |||||||||
Type: | initiation region | |||||||||
Name: | LCN12_1 | |||||||||
Description: | lipocalin 12 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
|
RGD ID: | 6807836 | |||||||||
Promoter ID: | HG_KWN:65663 | |||||||||
Type: | CpG-Island | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | CD4+TCell, Jurkat, Lymphoblastoid | |||||||||
Transcripts: | OTTHUMT00000055240 | |||||||||
Position: |
|
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 9q34.3(chr9:136323974-138014606)x1 | copy number loss | Sensorineural hearing loss [RCV000050344]|See cases [RCV000050344] | Chr9:136323974..138014606 [GRCh38] Chr9:139218428..140909058 [GRCh37] Chr9:138338249..140028879 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | Global developmental delay [RCV000050347]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050348]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050348]|See cases [RCV000050348] | Chr9:193412..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051009]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051009]|See cases [RCV000051009] | Chr9:121112395..138075224 [GRCh38] Chr9:123874673..140969676 [GRCh37] Chr9:122914494..140089497 [NCBI36] Chr9:9q33.2-34.3 |
pathogenic |
GRCh38/hg38 9q33.2-34.3(chr9:122792658-138124532)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051040]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051040]|See cases [RCV000051040] | Chr9:122792658..138124532 [GRCh38] Chr9:125554937..141018984 [GRCh37] Chr9:124594758..140138805 [NCBI36] Chr9:9q33.2-34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:136323974-138124532)x1 | copy number loss | Intellectual functioning disability [RCV000051116]|See cases [RCV000051116] | Chr9:136323974..138124532 [GRCh38] Chr9:139218428..141018984 [GRCh37] Chr9:138338249..140138805 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9q34.2-34.3(chr9:134428674-138154922)x1 | copy number loss | Talipes equinovarus [RCV000052936]|See cases [RCV000052936] | Chr9:134428674..138154922 [GRCh38] Chr9:137320520..141049374 [GRCh37] Chr9:136460341..140169195 [NCBI36] Chr9:9q34.2-34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:135452016-137613738)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052937]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052937]|See cases [RCV000052937] | Chr9:135452016..137613738 [GRCh38] Chr9:138343862..140508190 [GRCh37] Chr9:137483683..139628011 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:136015976-138124532)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052938]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052938]|See cases [RCV000052938] | Chr9:136015976..138124532 [GRCh38] Chr9:138907822..141018984 [GRCh37] Chr9:138047643..140138805 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:136926575-138114463)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052940]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052940]|See cases [RCV000052940] | Chr9:136926575..138114463 [GRCh38] Chr9:139821027..141008915 [GRCh37] Chr9:138940848..140128736 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 | copy number gain | Intrauterine growth retardation [RCV000053745]|See cases [RCV000053745] | Chr9:193412..138124532 [GRCh38] Chr9:204193..141018984 [GRCh37] Chr9:194193..140138805 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053746]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053746]|See cases [RCV000053746] | Chr9:193412..138114463 [GRCh38] Chr9:214367..141008915 [GRCh37] Chr9:204367..140128736 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q34.2-34.3(chr9:134174698-138138735)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053814]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053814]|See cases [RCV000053814] | Chr9:134174698..138138735 [GRCh38] Chr9:137091194..141033187 [GRCh37] Chr9:136029641..140153008 [NCBI36] Chr9:9q34.2-34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] | Chr9:193412..138179445 [GRCh38] Chr9:266045..141073897 [GRCh37] Chr9:256045..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q33.2-34.3(chr9:121586837-138179445)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|See cases [RCV000053776] | Chr9:121586837..138179445 [GRCh38] Chr9:124349116..141073897 [GRCh37] Chr9:123388937..140193718 [NCBI36] Chr9:9q33.2-34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) | copy number gain | See cases [RCV000133791] | Chr9:204193..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q34.11-34.3(chr9:130513207-138124532)x3 | copy number gain | See cases [RCV000133778] | Chr9:130513207..138124532 [GRCh38] Chr9:133388594..141018984 [GRCh37] Chr9:132378415..140138805 [NCBI36] Chr9:9q34.11-34.3 |
pathogenic |
GRCh38/hg38 9q34.11-34.3(chr9:129068560-138179445)x3 | copy number gain | See cases [RCV000134916] | Chr9:129068560..138179445 [GRCh38] Chr9:131830839..141073897 [GRCh37] Chr9:130870660..140193718 [NCBI36] Chr9:9q34.11-34.3 |
pathogenic |
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 | copy number gain | See cases [RCV000134920] | Chr9:121073102..138179445 [GRCh38] Chr9:123835380..141073897 [GRCh37] Chr9:122875201..140193718 [NCBI36] Chr9:9q33.2-34.3 |
pathogenic |
GRCh38/hg38 9q34.13-34.3(chr9:132986903-138114463)x3 | copy number gain | See cases [RCV000136790] | Chr9:132986903..138114463 [GRCh38] Chr9:135862290..141008915 [GRCh37] Chr9:134852111..140128736 [NCBI36] Chr9:9q34.13-34.3 |
pathogenic |
GRCh38/hg38 9q34.2-34.3(chr9:133504071-138159073)x3 | copy number gain | See cases [RCV000137825] | Chr9:133504071..138159073 [GRCh38] Chr9:136324358..141053525 [GRCh37] Chr9:135314179..140173346 [NCBI36] Chr9:9q34.2-34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 | copy number gain | See cases [RCV000138783] | Chr9:193412..138124524 [GRCh38] Chr9:204090..141018976 [GRCh37] Chr9:194090..140138797 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 | copy number gain | See cases [RCV000138962] | Chr9:193412..138159073 [GRCh38] Chr9:204104..141053525 [GRCh37] Chr9:194104..140173346 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic|conflicting data from submitters |
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 | copy number gain | See cases [RCV000139207] | Chr9:193412..138159073 [GRCh38] Chr9:68420641..141053525 [GRCh37] Chr9:67910461..140173346 [NCBI36] Chr9:9p11.2-q34.3 |
pathogenic |
GRCh38/hg38 9q34.2-34.3(chr9:133996227-138124524)x3 | copy number gain | See cases [RCV000139807] | Chr9:133996227..138124524 [GRCh38] Chr9:136861349..141018976 [GRCh37] Chr9:135851170..140138797 [NCBI36] Chr9:9q34.2-34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 | copy number gain | See cases [RCV000141876] | Chr9:203861..138125937 [GRCh38] Chr9:203861..141020389 [GRCh37] Chr9:193861..140140210 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q34.2-34.3(chr9:133918071-138159073)x3 | copy number gain | See cases [RCV000142955] | Chr9:133918071..138159073 [GRCh38] Chr9:136783193..141053525 [GRCh37] Chr9:135773014..140173346 [NCBI36] Chr9:9q34.2-34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:136877772-138124524)x1 | copy number loss | See cases [RCV000142978] | Chr9:136877772..138124524 [GRCh38] Chr9:139772224..141018976 [GRCh37] Chr9:138892045..140138797 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9q34.13-34.3(chr9:132386553-138059695)x3 | copy number gain | See cases [RCV000142636] | Chr9:132386553..138059695 [GRCh38] Chr9:135261940..140954147 [GRCh37] Chr9:134251761..140073968 [NCBI36] Chr9:9q34.13-34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:135704780-138125937)x4 | copy number gain | See cases [RCV000143394] | Chr9:135704780..138125937 [GRCh38] Chr9:138596626..141020389 [GRCh37] Chr9:137736447..140140210 [NCBI36] Chr9:9q34.3 |
likely pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 | copy number gain | See cases [RCV000143476] | Chr9:203862..138125937 [GRCh38] Chr9:203862..141020389 [GRCh37] Chr9:193862..140140210 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q34.3(chr9:136323974-138014606)x1 | copy number loss | See cases [RCV000148284] | Chr9:136323974..138014606 [GRCh38] Chr9:139218428..140909058 [GRCh37] Chr9:138338249..140028879 [NCBI36] Chr9:9q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | See cases [RCV000148113] | Chr9:193412..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 | copy number gain | See cases [RCV000240081] | Chr9:163131..141122114 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) | copy number gain | See cases [RCV000449375] | Chr9:62525..141006407 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:138222049-141018925)x1 | copy number loss | See cases [RCV000446074] | Chr9:138222049..141018925 [GRCh37] Chr9:9q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 | copy number gain | See cases [RCV000447207] | Chr9:203861..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q33.3-34.3(chr9:128652785-141044751)x3 | copy number gain | See cases [RCV000447080] | Chr9:128652785..141044751 [GRCh37] Chr9:9q33.3-34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:139282807-141020389)x1 | copy number loss | See cases [RCV000448743] | Chr9:139282807..141020389 [GRCh37] Chr9:9q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 | copy number gain | See cases [RCV000448978] | Chr9:203864..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q33.2-34.3(chr9:124642754-141146461)x3 | copy number gain | See cases [RCV000448784] | Chr9:124642754..141146461 [GRCh37] Chr9:9q33.2-34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:138209358-141020389)x1 | copy number loss | See cases [RCV000510584] | Chr9:138209358..141020389 [GRCh37] Chr9:9q34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:138275621-141020389)x3 | copy number gain | See cases [RCV000511188] | Chr9:138275621..141020389 [GRCh37] Chr9:9q34.3 |
likely pathogenic |
GRCh37/hg19 9q34.13-34.3(chr9:135377559-141213431)x1 | copy number loss | mTOR Inhibitor response [RCV000626442] | Chr9:135377559..141213431 [GRCh37] Chr9:9q34.13-34.3 |
drug response |
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) | copy number gain | Global developmental delay [RCV000626548]|Seizures [RCV000626548] | Chr9:71069743..140999928 [GRCh37] Chr9:9q21.11-34.3 |
likely pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) | copy number gain | See cases [RCV000512392] | Chr9:203862..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q34.13-34.3(chr9:135105971-141020389)x3 | copy number gain | not provided [RCV000683160] | Chr9:135105971..141020389 [GRCh37] Chr9:9q34.13-34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:139754427-140088630)x3 | copy number gain | not provided [RCV000753226] | Chr9:139754427..140088630 [GRCh37] Chr9:9q34.3 |
benign |
GRCh37/hg19 9q34.3(chr9:139754431-140088630)x3 | copy number gain | not provided [RCV000753227] | Chr9:139754431..140088630 [GRCh37] Chr9:9q34.3 |
benign |
GRCh37/hg19 9q34.3(chr9:139835558-139983339)x3 | copy number gain | not provided [RCV000753228] | Chr9:139835558..139983339 [GRCh37] Chr9:9q34.3 |
benign |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 | copy number gain | not provided [RCV000748055] | Chr9:10590..141122247 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:137816459-141114095)x1 | copy number loss | not provided [RCV000748787] | Chr9:137816459..141114095 [GRCh37] Chr9:9q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 | copy number gain | not provided [RCV000748053] | Chr9:10590..141107672 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 | copy number gain | not provided [RCV000748063] | Chr9:46587..141066491 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 | copy number gain | not provided [RCV000748054] | Chr9:10590..141114095 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 | copy number gain | not provided [RCV000845900] | Chr9:203861..141020388 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q34.3(chr9:139766260-140186072)x3 | copy number gain | not provided [RCV000848688] | Chr9:139766260..140186072 [GRCh37] Chr9:9q34.3 |
uncertain significance |
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 | copy number gain | not provided [RCV000847808] | Chr9:71416475..141020389 [GRCh37] Chr9:9q21.11-34.3 |
pathogenic |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:28733 | AgrOrtholog |
COSMIC | LCN12 | COSMIC |
Ensembl Genes | ENSG00000184925 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSP00000360695 | UniProtKB/TrEMBL |
ENSP00000360696 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSP00000473473 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000371632 | UniProtKB/TrEMBL |
ENST00000371633 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENST00000471615 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.40.128.20 | UniProtKB/Swiss-Prot |
GTEx | ENSG00000184925 | GTEx |
HGNC ID | HGNC:28733 | ENTREZGENE |
Human Proteome Map | LCN12 | Human Proteome Map |
InterPro | Calycin | UniProtKB/Swiss-Prot |
Lipocalin | UniProtKB/Swiss-Prot | |
Lipocln_cytosolic_FA-bd_dom | UniProtKB/Swiss-Prot | |
KEGG Report | hsa:286256 | UniProtKB/Swiss-Prot |
NCBI Gene | 286256 | ENTREZGENE |
OMIM | 612905 | OMIM |
PANTHER | PTHR11430 | UniProtKB/Swiss-Prot |
Pfam | Lipocalin | UniProtKB/Swiss-Prot |
PharmGKB | PA134959347 | PharmGKB |
Superfamily-SCOP | SSF50814 | UniProtKB/Swiss-Prot |
UniGene | Hs.440519 | ENTREZGENE |
UniProt | A0A384MDV4_HUMAN | UniProtKB/TrEMBL |
LCN12_HUMAN | UniProtKB/Swiss-Prot | |
Q5SQ16_HUMAN | UniProtKB/TrEMBL | |
Q6JVE5 | ENTREZGENE | |
Q8IW14 | ENTREZGENE, UniProtKB/TrEMBL | |
R4GN38_HUMAN | UniProtKB/TrEMBL | |
UniProt Secondary | A2AMJ7 | UniProtKB/Swiss-Prot |
![]() |
More on LCN12 | |
![]() |
Alliance Gene |
![]() |
NCBI Gene |
![]() |
Ensembl Gene |
![]() |
JBrowse: hg19 hg38 |
![]() |
HGNC Report |
![]() |
NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1350830 |
Created: | 2005-03-08 |
Species: | Homo sapiens |
Last Modified: | 2019-11-26 |
Status: | ACTIVE |
![]() |
![]() |
![]() |
![]() |
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.