Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: SHOC1 (shortage in chiasmata 1) Homo sapiens
Analyze
Symbol: SHOC1
Name: shortage in chiasmata 1
Description: Exhibits ATPase activity and single-stranded DNA binding activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to localize to the condensed nuclear chromosome; INTERACTS WITH 17beta-estradiol; 2-hydroxypropanoic acid; antirheumatic drug.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C9orf84; chromosome 9 open reading frame 84; FLJ32779; FLJ44067; hypothetical protein LOC158401; MGC43661; MZIP2; uncharacterized protein C9orf84; ZIP2; ZIP2H
Orthologs:
Mus musculus (house mouse) : Shoc1 (shortage in chiasmata 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Shoc1 (shortage in chiasmata 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shoc1 (shortage in chiasmata 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SHOC1 (shortage in chiasmata 1)
Canis lupus familiaris (dog) : SHOC1 (shortage in chiasmata 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shoc1 (shortage in chiasmata 1)
Sus scrofa (pig) : SHOC1 (shortage in chiasmata 1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389111,686,171 - 111,795,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379114,448,901 - 114,557,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,488,722 - 113,585,600 (-)NCBINCBI36hg18NCBI36
Build 349111,579,727 - 111,636,778NCBI
Celera984,947,957 - 85,044,839 (-)NCBI
Cytogenetic Map9q31.3NCBI
HuRef984,047,403 - 84,144,313 (-)NCBIHuRef
CHM1_19114,595,169 - 114,703,607 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
Nomenclature History
 
More on SHOC1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1351188
Created: 2005-03-08
Species: Homo sapiens
Last Modified: 2019-11-26
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.