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Analyze GeneStrainQTL List |
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![]() Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | (S)-nicotine | increases expression | ISO | RGD:1622218 | 6480464 | Nicotine results in increased expression of BCAS1 mRNA | CTD | PMID:21955143 | 17beta-estradiol | multiple interactions | EXP | | 6480464 | [Raloxifene Hydrochloride co-treated with Estradiol] results in increased expression of BCAS1 mRNA | CTD | PMID:21185374 | 17beta-hydroxy-17-methylestra-4,9,11-trien-3-one | increases expression | EXP | | 6480464 | Metribolone results in increased expression of BCAS1 mRNA | CTD | PMID:17010196 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:1622218 | 6480464 | Tetrachlorodibenzodioxin affects the expression of BCAS1 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | EXP | | 6480464 | [Tetrachlorodibenzodioxin co-treated with 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide] results in decreased expression of BCAS1 mRNA | CTD | PMID:29704546 | 4,4'-sulfonyldiphenol | increases expression | ISO | RGD:1622218 | 6480464 | bis(4-hydroxyphenyl)sulfone results in increased expression of BCAS1 mRNA | CTD | PMID:30951980 | 6-propyl-2-thiouracil | decreases expression | ISO | RGD:628644 | 6480464 | Propylthiouracil results in decreased expression of BCAS1 mRNA | CTD | PMID:25825206 | aflatoxin B1 | decreases expression | EXP | | 6480464 | Aflatoxin B1 results in decreased expression of BCAS1 mRNA | CTD | PMID:21641981 | aflatoxin B1 | increases methylation | EXP | | 6480464 | Aflatoxin B1 results in increased methylation of BCAS1 5' UTR | CTD | PMID:30157460 | ammonium chloride | affects expression | ISO | RGD:628644 | 6480464 | Ammonium Chloride affects the expression of BCAS1 mRNA | CTD | PMID:16483693 | benzo[a]pyrene | decreases expression | EXP | | 6480464 | Benzo(a)pyrene results in decreased expression of BCAS1 mRNA | CTD | PMID:21871943 | benzo[a]pyrene | decreases expression | ISO | RGD:1622218 | 6480464 | Benzo(a)pyrene results in decreased expression of BCAS1 mRNA | CTD | PMID:22228805 | bisphenol A | decreases expression | ISO | RGD:628644 | 6480464 | bisphenol A results in decreased expression of BCAS1 mRNA | CTD | PMID:25181051 | bisphenol A | increases expression | ISO | RGD:1622218 | 6480464 | bisphenol A results in increased expression of BCAS1 mRNA | CTD | PMID:30951980 | bisphenol A | increases methylation | ISO | RGD:1622218 | 6480464 | bisphenol A results in increased methylation of BCAS1 promoter | CTD | PMID:27312807 | bisphenol F | increases expression | ISO | RGD:1622218 | 6480464 | bisphenol F results in increased expression of BCAS1 mRNA | CTD | PMID:30951980 | butanal | decreases expression | EXP | | 6480464 | butyraldehyde results in decreased expression of BCAS1 mRNA | CTD | PMID:26079696 | cadmium atom | decreases expression | EXP | | 6480464 | Cadmium results in decreased expression of BCAS1 mRNA | CTD | PMID:24376830 | cadmium dichloride | increases expression | EXP | | 6480464 | Cadmium Chloride results in increased expression of BCAS1 mRNA | CTD | PMID:21457566 | calcitriol | multiple interactions | EXP | | 6480464 | [Testosterone co-treated with Calcitriol] results in increased expression of BCAS1 mRNA | CTD | PMID:21592394 | calcitriol | increases expression | EXP | | 6480464 | Calcitriol results in increased expression of BCAS1 mRNA | CTD | PMID:16002434, PMID:21592394 | cobalt dichloride | decreases expression | ISO | RGD:628644 | 6480464 | cobaltous chloride results in decreased expression of BCAS1 mRNA | CTD | PMID:24386269 | copper(II) sulfate | decreases expression | EXP | | 6480464 | Copper Sulfate results in decreased expression of BCAS1 mRNA | CTD | PMID:19549813 | cyclosporin A | increases expression | EXP | | 6480464 | Cyclosporine results in increased expression of BCAS1 mRNA | CTD | PMID:27989131 | cyclosporin A | increases methylation | EXP | | 6480464 | Cyclosporine results in increased methylation of BCAS1 promoter | CTD | PMID:27989131 | ethanol | decreases expression | ISO | RGD:1622218 | 6480464 | Ethanol results in decreased expression of BCAS1 mRNA | CTD | PMID:21955143 | ethanol | affects splicing | ISO | RGD:1622218 | 6480464 | Ethanol affects the splicing of BCAS1 mRNA | CTD | PMID:30319688 | ethanol | increases expression | ISO | RGD:1622218 | 6480464 | Ethanol results in increased expression of BCAS1 mRNA | CTD | PMID:30319688 | flavonoids | decreases expression | ISO | RGD:628644 | 6480464 | Flavonoids results in decreased expression of BCAS1 mRNA | CTD | PMID:18035473 | furan | increases expression | ISO | RGD:628644 | 6480464 | furan results in increased expression of BCAS1 mRNA | CTD | PMID:27387713 | glycidol | decreases expression | ISO | RGD:628644 | 6480464 | glycidol results in decreased expression of BCAS1 mRNA | CTD | PMID:24395379 | indole-3-methanol | multiple interactions | ISO | RGD:628644 | 6480464 | [indole-3-carbinol co-treated with Diethylnitrosamine co-treated with Acetylcysteine] results in decreased expression of BCAS1 mRNA | CTD | PMID:22129741 | menadione | affects expression | EXP | | 6480464 | Vitamin K 3 affects the expression of BCAS1 mRNA | CTD | PMID:20044591 | morphine | decreases expression | ISO | RGD:1622218 | 6480464 | Morphine results in decreased expression of BCAS1 mRNA | CTD | PMID:21955143 | N-acetyl-L-cysteine | multiple interactions | ISO | RGD:628644 | 6480464 | [indole-3-carbinol co-treated with Diethylnitrosamine co-treated with Acetylcysteine] results in decreased expression of BCAS1 mRNA | CTD | PMID:22129741 | N-nitrosodiethylamine | increases expression | ISO | RGD:1622218 | 6480464 | Diethylnitrosamine results in increased expression of BCAS1 mRNA | CTD | PMID:24535843 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:628644 | 6480464 | [indole-3-carbinol co-treated with Diethylnitrosamine co-treated with Acetylcysteine] results in decreased expression of BCAS1 mRNA | CTD | PMID:22129741 | nicotine | increases expression | ISO | RGD:1622218 | 6480464 | Nicotine results in increased expression of BCAS1 mRNA | CTD | PMID:21955143 | paracetamol | decreases expression | EXP | | 6480464 | Acetaminophen results in decreased expression of BCAS1 mRNA | CTD | PMID:26690555 | pentanal | decreases expression | EXP | | 6480464 | pentanal results in decreased expression of BCAS1 mRNA | CTD | PMID:26079696 | raloxifene | multiple interactions | EXP | | 6480464 | [Raloxifene Hydrochloride co-treated with Estradiol] results in increased expression of BCAS1 mRNA | CTD | PMID:21185374 | silicon dioxide | decreases expression | EXP | | 6480464 | Silicon Dioxide analog results in decreased expression of BCAS1 mRNA | CTD | PMID:25895662 | silver atom | increases expression | ISO | RGD:1622218 | 6480464 | Silver results in increased expression of BCAS1 mRNA | CTD | PMID:27131904 | silver(0) | increases expression | ISO | RGD:1622218 | 6480464 | Silver results in increased expression of BCAS1 mRNA | CTD | PMID:27131904 | sodium arsenite | affects methylation | EXP | | 6480464 | sodium arsenite affects the methylation of BCAS1 gene | CTD | PMID:28589171 | sodium arsenite | decreases expression | EXP | | 6480464 | sodium arsenite results in decreased expression of BCAS1 mRNA | CTD | PMID:29301061 | testosterone | multiple interactions | EXP | | 6480464 | [Testosterone co-treated with Calcitriol] results in increased expression of BCAS1 mRNA | CTD | PMID:21592394 | testosterone | increases expression | EXP | | 6480464 | Testosterone results in increased expression of BCAS1 mRNA | CTD | PMID:21592394 | titanium dioxide | decreases expression | ISO | RGD:1622218 | 6480464 | titanium dioxide results in decreased expression of BCAS1 mRNA | CTD | PMID:23557971 | urethane | affects expression | EXP | | 6480464 | Urethane affects the expression of BCAS1 mRNA | CTD | PMID:28818685 | valproic acid | decreases methylation | EXP | | 6480464 | Valproic Acid results in decreased methylation of BCAS1 gene | CTD | PMID:29154799 | valproic acid | increases expression | EXP | | 6480464 | Valproic Acid results in increased expression of BCAS1 mRNA | CTD | PMID:28001369 | |
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1. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
2. | RGD automated import pipeline for gene-chemical interactions |
PubMed | 8125298 8758909 9671742 10857754 11148209 11780052 12477932 14567997 15489334 15583422 17353931 18976975 20379614 20889312 23533145 28230289 29509190 |
BCAS1 (Homo sapiens - human) |
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Bcas1 (Mus musculus - house mouse) |
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Bcas1 (Rattus norvegicus - Norway rat) |
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Bcas1 (Chinchilla lanigera - long-tailed chinchilla) |
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BCAS1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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BCAS1 (Canis lupus familiaris - dog) |
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Bcas1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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BCAS1 (Sus scrofa - pig) |
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D20S1085 |
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AL022246 |
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Z94440 |
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RH47737 |
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A004M22 |
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STS-Z41321 |
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RH78040 |
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D6S1155E |
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D20S720 |
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Z94303 |
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The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001316361 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001323347 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001366295 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001366296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001366297 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001366298 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_003657 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_005260589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_005260590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_005260591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_005260594 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_005260595 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011529090 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011529091 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017028111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC004501 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC005220 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF041260 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK225656 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK294135 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK294150 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK295318 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK304213 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK308384 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK311215 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK315220 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK316038 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL354801 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024044 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC126346 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC126348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471077 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CR749643 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DC358921 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
HY323863 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
KF495690 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_001316361 ⟹ NP_001303290 | ||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
ACTGGGTAGAATACTTGGGGTGCCAGGGAGGCATTAATGCGAGAGGAGTCAGGTGCTCAGTTTThide sequence |
RefSeq Acc Id: | NM_001323347 ⟹ NP_001310276 | ||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
ACTCATTCTTCTGGTGTCCTGTGGAGAGGTGTCTTCTGCCACGATTGAGCAATGGGTAACCAAAhide sequence |
RefSeq Acc Id: | NM_001366295 ⟹ NP_001353224 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | NM_001366296 ⟹ NP_001353225 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | NM_001366297 ⟹ NP_001353226 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | NM_001366298 ⟹ NP_001353227 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | NM_003657 ⟹ NP_003648 | ||||||||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
ACTGGGTAGAATACTTGGGGTGCCAGGGAGGCATTAATGCGAGAGGAGTCAGGTGCTCAGTTTThide sequence |
RefSeq Acc Id: | XM_005260589 ⟹ XP_005260646 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_005260590 ⟹ XP_005260647 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_005260591 ⟹ XP_005260648 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_005260594 ⟹ XP_005260651 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_005260595 ⟹ XP_005260652 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_011529090 ⟹ XP_011527392 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
TTCTTCTGGTGTCCTGTGGAGAGGTGTCTTCTGCCACGATTGAGCAATGGGTAACCAAATGAGThide sequence |
RefSeq Acc Id: | XM_011529091 ⟹ XP_011527393 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
RefSeq Acc Id: | XM_017028111 ⟹ XP_016883600 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
AGGCTCCACCGACAGCCAGGCACTGGGCAGCACGCACTGGAGACCCAGGACCCTGTGCAGGAGChide sequence |
Protein RefSeqs | NP_001303290 | (Get FASTA) | NCBI Sequence Viewer |
NP_001310276 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001353224 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001353225 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001353226 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001353227 | (Get FASTA) | NCBI Sequence Viewer | |
NP_003648 | (Get FASTA) | NCBI Sequence Viewer | |
XP_005260646 | (Get FASTA) | NCBI Sequence Viewer | |
XP_005260647 | (Get FASTA) | NCBI Sequence Viewer | |
XP_005260648 | (Get FASTA) | NCBI Sequence Viewer | |
XP_005260651 | (Get FASTA) | NCBI Sequence Viewer | |
XP_005260652 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011527392 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011527393 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016883600 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAC39896 | (Get FASTA) | NCBI Sequence Viewer |
AAH24044 | (Get FASTA) | NCBI Sequence Viewer | |
AAI26347 | (Get FASTA) | NCBI Sequence Viewer | |
AAI26349 | (Get FASTA) | NCBI Sequence Viewer | |
BAG37652 | (Get FASTA) | NCBI Sequence Viewer | |
BAG57463 | (Get FASTA) | NCBI Sequence Viewer | |
BAG57475 | (Get FASTA) | NCBI Sequence Viewer | |
BAG58295 | (Get FASTA) | NCBI Sequence Viewer | |
BAG65086 | (Get FASTA) | NCBI Sequence Viewer | |
BAH14409 | (Get FASTA) | NCBI Sequence Viewer | |
CAH18437 | (Get FASTA) | NCBI Sequence Viewer | |
EAW75574 | (Get FASTA) | NCBI Sequence Viewer | |
EAW75575 | (Get FASTA) | NCBI Sequence Viewer | |
EAW75576 | (Get FASTA) | NCBI Sequence Viewer | |
O75363 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_003648 ⟸ NM_003657 |
- Peptide Label: | isoform 1 |
- UniProtKB: | O75363 (UniProtKB/Swiss-Prot) |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_005260652 ⟸ XM_005260595 |
- Peptide Label: | isoform X10 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_005260648 ⟸ XM_005260591 |
- Peptide Label: | isoform X4 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_005260646 ⟸ XM_005260589 |
- Peptide Label: | isoform X2 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_005260651 ⟸ XM_005260594 |
- Peptide Label: | isoform X8 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_005260647 ⟸ XM_005260590 |
- Peptide Label: | isoform X3 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_011527393 ⟸ XM_011529091 |
- Peptide Label: | isoform X5 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_011527392 ⟸ XM_011529090 |
- Peptide Label: | isoform X1 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | NP_001303290 ⟸ NM_001316361 |
- Peptide Label: | isoform 2 |
- UniProtKB: | B2RCQ5 (UniProtKB/TrEMBL), G3XAF7 (UniProtKB/TrEMBL), Q05CL3 (UniProtKB/TrEMBL) |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | NP_001310276 ⟸ NM_001323347 |
- Peptide Label: | isoform 2 |
- UniProtKB: | G3XAF7 (UniProtKB/TrEMBL) |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | XP_016883600 ⟸ XM_017028111 |
- Peptide Label: | isoform X9 |
- Sequence: |
MGNQMSVPQRVEDQENEPEAETYQDNASALNGVPVVVSTHTVQHLEEVDLGISVKTDNVATSSPhide sequence |
RefSeq Acc Id: | NP_001353226 ⟸ NM_001366297 |
- Peptide Label: | isoform 5 |
RefSeq Acc Id: | NP_001353224 ⟸ NM_001366295 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | NP_001353225 ⟸ NM_001366296 |
- Peptide Label: | isoform 4 |
RefSeq Acc Id: | NP_001353227 ⟸ NM_001366298 |
- Peptide Label: | isoform 6 |
RGD ID: | 13602132 | |||||||||
Promoter ID: | EPDNEW_H27250 | |||||||||
Type: | multiple initiation site | |||||||||
Name: | BCAS1_2 | |||||||||
Description: | breast carcinoma amplified sequence 1 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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RGD ID: | 13602134 | |||||||||
Promoter ID: | EPDNEW_H27251 | |||||||||
Type: | initiation region | |||||||||
Name: | BCAS1_1 | |||||||||
Description: | breast carcinoma amplified sequence 1 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 20q13.13-13.2(chr20:49947237-55875406)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053037]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053037]|See cases [RCV000053037] | Chr20:49947237..55875406 [GRCh38] Chr20:48563774..54450462 [GRCh37] Chr20:47997181..53883869 [NCBI36] Chr20:20q13.13-13.2 |
pathogenic |
GRCh38/hg38 20q13.12-13.33(chr20:44787704-64277321)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053035]|Abnormality of the heart [RCV000053036]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053035]|See cases [RCV000053035] | Chr20:44787704..64277321 [GRCh38] Chr20:43416345..62908674 [GRCh37] Chr20:42849759..62379118 [NCBI36] Chr20:20q13.12-13.33 |
pathogenic |
NM_003657.2(BCAS1):c.1062C>T (p.Thr354=) | single nucleotide variant | Malignant melanoma [RCV000072706] | Chr20:53985365 [GRCh38] Chr20:52601904 [GRCh37] Chr20:52035311 [NCBI36] Chr20:20q13.2 |
not provided |
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 | copy number gain | See cases [RCV000135859] | Chr20:99557..64277321 [GRCh38] Chr20:80198..62908674 [GRCh37] Chr20:28198..62379118 [NCBI36] Chr20:20p13-q13.33 |
pathogenic |
GRCh38/hg38 20q13.2-13.33(chr20:53236165-64284202)x3 | copy number gain | See cases [RCV000143584] | Chr20:53236165..64284202 [GRCh38] Chr20:51852704..62915555 [GRCh37] Chr20:51286111..62385999 [NCBI36] Chr20:20q13.2-13.33 |
likely pathogenic |
GRCh37/hg19 20q13.2-13.33(chr20:51542616-62915555)x3 | copy number gain | See cases [RCV000511980] | Chr20:51542616..62915555 [GRCh37] Chr20:20q13.2-13.33 |
likely pathogenic |
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 | copy number gain | See cases [RCV000510832] | Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) | copy number gain | See cases [RCV000512450] | Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3 | copy number gain | not provided [RCV000741059] | Chr20:63244..62961294 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
GRCh37/hg19 20q13.2(chr20:52645142-52658001)x1 | copy number loss | not provided [RCV000741266] | Chr20:52645142..52658001 [GRCh37] Chr20:20q13.2 |
benign |
GRCh37/hg19 20q13.2(chr20:52648368-52663409)x1 | copy number loss | not provided [RCV000741267] | Chr20:52648368..52663409 [GRCh37] Chr20:20q13.2 |
benign |
GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3 | copy number gain | not provided [RCV000741057] | Chr20:63244..62912463 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3 | copy number gain | not provided [RCV000741058] | Chr20:63244..62948788 [GRCh37] Chr20:20p13-q13.33 |
pathogenic |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:974 | AgrOrtholog |
COSMIC | BCAS1 | COSMIC |
Ensembl Genes | ENSG00000064787 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSP00000360490 | ENTREZGENE, UniProtKB/TrEMBL |
ENSP00000379290 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSP00000396361 | UniProtKB/TrEMBL | |
ENSP00000399936 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000371435 | ENTREZGENE, UniProtKB/TrEMBL |
ENST00000395961 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENST00000422805 | UniProtKB/TrEMBL | |
ENST00000448484 | UniProtKB/TrEMBL | |
GTEx | ENSG00000064787 | GTEx |
HGNC ID | HGNC:974 | ENTREZGENE |
Human Proteome Map | BCAS1 | Human Proteome Map |
InterPro | NABC1 | UniProtKB/Swiss-Prot |
KEGG Report | hsa:8537 | UniProtKB/Swiss-Prot |
NCBI Gene | 8537 | ENTREZGENE |
OMIM | 602968 | OMIM |
PANTHER | PTHR15016 | UniProtKB/Swiss-Prot |
PharmGKB | PA25284 | PharmGKB |
UniGene | Hs.400556 | ENTREZGENE |
UniProt | A0AVG7_HUMAN | UniProtKB/TrEMBL |
B2RCQ5 | ENTREZGENE, UniProtKB/TrEMBL | |
BCAS1_HUMAN | UniProtKB/Swiss-Prot | |
G3XAF7 | ENTREZGENE, UniProtKB/TrEMBL | |
H0Y542_HUMAN | UniProtKB/TrEMBL | |
H7C1E7_HUMAN | UniProtKB/TrEMBL | |
O75363 | ENTREZGENE | |
Q05CL3 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | A0AVG5 | UniProtKB/Swiss-Prot |
Q68CZ3 | UniProtKB/Swiss-Prot |
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More on BCAS1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: hg19 hg38 |
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HGNC Report |
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NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1351231 |
Created: | 2005-03-08 |
Species: | Homo sapiens |
Last Modified: | 2019-11-26 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.