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Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
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![]() Biological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | detection of chemical stimulus involved in sensory perception of smell | | IEA | GO:0004984 | 2290271 | | GOC | GO_REF:0000108 | G protein-coupled receptor signaling pathway | | IEA | UniProtKB-KW:KW-0297 | 2290271 | | UniProt | GO_REF:0000037 | |
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1. | GOA_HUMAN data from the GO Consortium |
2. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | RGD automated import pipeline for gene-chemical interactions |
OR13C9 (Homo sapiens - human) |
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Olfr271-ps1 (Mus musculus - house mouse) |
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Olr852 (Rattus norvegicus - Norway rat) |
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cOR13C23 (Canis lupus familiaris - dog) |
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LOC100154900 (Sus scrofa - pig) |
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OR13C9__5961 |
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The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001001956 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AB065672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB065708 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL359846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BK004250 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471105 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CS248224 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
KP290186 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_001001956 ⟹ NP_001001956 | ||||||||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
ATGGAATGGGAAAACCAAACCATTCTGGTGGAATTTTTTCTGAAGGGACATTCTGTTCACCCAAhide sequence |
Protein RefSeqs | NP_001001956 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | ALI87370 | (Get FASTA) | NCBI Sequence Viewer |
BAC05897 | (Get FASTA) | NCBI Sequence Viewer | |
BAC05930 | (Get FASTA) | NCBI Sequence Viewer | |
CAJ56637 | (Get FASTA) | NCBI Sequence Viewer | |
DAA04648 | (Get FASTA) | NCBI Sequence Viewer | |
EAW58988 | (Get FASTA) | NCBI Sequence Viewer | |
Q8NGT0 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001001956 ⟸ NM_001001956 |
- UniProtKB: | Q8NGT0 (UniProtKB/Swiss-Prot) |
- Sequence: |
MEWENQTILVEFFLKGHSVHPRLELLFFVLIFIMYVVILLGNGTLILISILDPHLHTPMYFFLGhide sequence |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 9q22.33-33.1(chr9:99138048-115011033)x1 | copy number loss | Abnormal facial shape [RCV000050315]|See cases [RCV000050315] | Chr9:99138048..115011033 [GRCh38] Chr9:101900330..117773312 [GRCh37] Chr9:100940151..116813133 [NCBI36] Chr9:9q22.33-33.1 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | Global developmental delay [RCV000050347]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050348]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050348]|See cases [RCV000050348] | Chr9:193412..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q22.33-33.1(chr9:99349916-115767475)x1 | copy number loss | Chiari malformation type II [RCV000052921]|See cases [RCV000052921] | Chr9:99349916..115767475 [GRCh38] Chr9:102112198..118529754 [GRCh37] Chr9:101152019..117569575 [NCBI36] Chr9:9q22.33-33.1 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 | copy number gain | Intrauterine growth retardation [RCV000053745]|See cases [RCV000053745] | Chr9:193412..138124532 [GRCh38] Chr9:204193..141018984 [GRCh37] Chr9:194193..140138805 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053746]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053746]|See cases [RCV000053746] | Chr9:193412..138114463 [GRCh38] Chr9:214367..141008915 [GRCh37] Chr9:204367..140128736 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] | Chr9:193412..138179445 [GRCh38] Chr9:266045..141073897 [GRCh37] Chr9:256045..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q22.1-32(chr9:88522292-113687796)x3 | copy number gain | Global developmental delay [RCV000053752]|See cases [RCV000053752] | Chr9:88522292..113687796 [GRCh38] Chr9:91137207..116450076 [GRCh37] Chr9:90327027..115489897 [NCBI36] Chr9:9q22.1-32 |
pathogenic |
GRCh38/hg38 9q22.32-31.2(chr9:94184266-106730550)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053774]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053774]|See cases [RCV000053774] | Chr9:94184266..106730550 [GRCh38] Chr9:96946548..109492831 [GRCh37] Chr9:95986369..108532652 [NCBI36] Chr9:9q22.32-31.2 |
pathogenic |
NM_001001956.1(OR13C9):c.956G>A (p.Ter319=) | single nucleotide variant | Malignant melanoma [RCV000068479] | Chr9:104617249 [GRCh38] Chr9:107379530 [GRCh37] Chr9:106419351 [NCBI36] Chr9:9q31.1 |
not provided |
NM_001001956.1(OR13C9):c.192G>A (p.Gly64=) | single nucleotide variant | Malignant melanoma [RCV000068480] | Chr9:104618013 [GRCh38] Chr9:107380294 [GRCh37] Chr9:106420115 [NCBI36] Chr9:9q31.1 |
not provided |
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) | copy number gain | See cases [RCV000133791] | Chr9:204193..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q22.32-31.3(chr9:95061030-108695569)x1 | copy number loss | See cases [RCV000134375] | Chr9:95061030..108695569 [GRCh38] Chr9:97823312..111457849 [GRCh37] Chr9:96863133..110497670 [NCBI36] Chr9:9q22.32-31.3 |
pathogenic |
GRCh38/hg38 9q31.1-32(chr9:103767420-112984794)x1 | copy number loss | See cases [RCV000134976] | Chr9:103767420..112984794 [GRCh38] Chr9:106529701..115747074 [GRCh37] Chr9:105569522..114786895 [NCBI36] Chr9:9q31.1-32 |
pathogenic |
GRCh38/hg38 9q31.1(chr9:103006145-105161449)x1 | copy number loss | See cases [RCV000135554] | Chr9:103006145..105161449 [GRCh38] Chr9:105768427..107923730 [GRCh37] Chr9:104808248..106963551 [NCBI36] Chr9:9q31.1 |
uncertain significance |
GRCh38/hg38 9q31.1(chr9:104300531-104730156)x3 | copy number gain | See cases [RCV000136069] | Chr9:104300531..104730156 [GRCh38] Chr9:107062812..107492437 [GRCh37] Chr9:106102633..106532258 [NCBI36] Chr9:9q31.1 |
likely benign |
GRCh38/hg38 9q21.11-31.2(chr9:68420430-106579493)x3 | copy number gain | See cases [RCV000136788] | Chr9:68420430..106579493 [GRCh38] Chr9:71130848..109341774 [GRCh37] Chr9:70225166..108381595 [NCBI36] Chr9:9q21.11-31.2 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 | copy number gain | See cases [RCV000138783] | Chr9:193412..138124524 [GRCh38] Chr9:204090..141018976 [GRCh37] Chr9:194090..140138797 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q22.33-31.3(chr9:99024205-109947890)x1 | copy number loss | See cases [RCV000138281] | Chr9:99024205..109947890 [GRCh38] Chr9:101786487..112710170 [GRCh37] Chr9:100826308..111749991 [NCBI36] Chr9:9q22.33-31.3 |
pathogenic|likely pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 | copy number gain | See cases [RCV000138962] | Chr9:193412..138159073 [GRCh38] Chr9:204104..141053525 [GRCh37] Chr9:194104..140173346 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic|conflicting data from submitters |
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 | copy number gain | See cases [RCV000139207] | Chr9:193412..138159073 [GRCh38] Chr9:68420641..141053525 [GRCh37] Chr9:67910461..140173346 [NCBI36] Chr9:9p11.2-q34.3 |
pathogenic |
GRCh38/hg38 9q21.12-31.3(chr9:69627642-111454304)x3 | copy number gain | See cases [RCV000139789] | Chr9:69627642..111454304 [GRCh38] Chr9:72242558..114216584 [GRCh37] Chr9:71432378..113256405 [NCBI36] Chr9:9q21.12-31.3 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 | copy number gain | See cases [RCV000141876] | Chr9:203861..138125937 [GRCh38] Chr9:203861..141020389 [GRCh37] Chr9:193861..140140210 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q31.1-31.2(chr9:104036284-105935181)x3 | copy number gain | See cases [RCV000143264] | Chr9:104036284..105935181 [GRCh38] Chr9:106798565..108697462 [GRCh37] Chr9:105838386..107737283 [NCBI36] Chr9:9q31.1-31.2 |
uncertain significance |
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 | copy number gain | See cases [RCV000143476] | Chr9:203862..138125937 [GRCh38] Chr9:203862..141020389 [GRCh37] Chr9:193862..140140210 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh38/hg38 9q22.33-33.1(chr9:99138048-115011033)x1 | copy number loss | See cases [RCV000148264] | Chr9:99138048..115011033 [GRCh38] Chr9:101900330..117773312 [GRCh37] Chr9:100940151..116813133 [NCBI36] Chr9:9q22.33-33.1 |
pathogenic |
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 | copy number gain | See cases [RCV000148113] | Chr9:193412..138179445 [GRCh38] Chr9:204193..141073897 [GRCh37] Chr9:194193..140193718 [NCBI36] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 | copy number gain | See cases [RCV000240081] | Chr9:163131..141122114 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) | copy number gain | See cases [RCV000449375] | Chr9:62525..141006407 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 | copy number gain | See cases [RCV000447207] | Chr9:203861..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q31.1-33.3(chr9:104604851-126253089)x1 | copy number loss | See cases [RCV000447763] | Chr9:104604851..126253089 [GRCh37] Chr9:9q31.1-33.3 |
pathogenic |
NC_000009.11:g.(?_102339410)_(109549354_?)del | deletion | Schizophrenia [RCV000416788] | Chr9:102339410..109549354 [GRCh37] Chr9:101379231..108589175 [NCBI36] Chr9:9q22.33-31.2 |
likely pathogenic |
GRCh37/hg19 9q31.1-31.3(chr9:103271401-113948226)x1 | copy number loss | See cases [RCV000447957] | Chr9:103271401..113948226 [GRCh37] Chr9:9q31.1-31.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 | copy number gain | See cases [RCV000448978] | Chr9:203864..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) | copy number gain | Global developmental delay [RCV000626548]|Seizures [RCV000626548] | Chr9:71069743..140999928 [GRCh37] Chr9:9q21.11-34.3 |
likely pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) | copy number gain | See cases [RCV000512392] | Chr9:203862..141020389 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q31.1-31.3(chr9:106487247-114541579)x1 | copy number loss | not provided [RCV000683163] | Chr9:106487247..114541579 [GRCh37] Chr9:9q31.1-31.3 |
pathogenic |
GRCh37/hg19 9q31.1(chr9:107370498-107379895)x1 | copy number loss | not provided [RCV000748578] | Chr9:107370498..107379895 [GRCh37] Chr9:9q31.1 |
benign |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 | copy number gain | not provided [RCV000748055] | Chr9:10590..141122247 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 | copy number gain | not provided [RCV000748053] | Chr9:10590..141107672 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 | copy number gain | not provided [RCV000748063] | Chr9:46587..141066491 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 | copy number gain | not provided [RCV000748054] | Chr9:10590..141114095 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 | copy number gain | not provided [RCV000845900] | Chr9:203861..141020388 [GRCh37] Chr9:9p24.3-q34.3 |
pathogenic |
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 | copy number gain | not provided [RCV000847808] | Chr9:71416475..141020389 [GRCh37] Chr9:9q21.11-34.3 |
pathogenic |
GRCh37/hg19 9q31.1(chr9:106618735-107897515)x3 | copy number gain | not provided [RCV000848900] | Chr9:106618735..107897515 [GRCh37] Chr9:9q31.1 |
uncertain significance |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:15104 | AgrOrtholog |
COSMIC | OR13C9 | COSMIC |
Ensembl Genes | ENSG00000136839 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSP00000259362 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENST00000259362 | ENTREZGENE, UniProtKB/Swiss-Prot |
GTEx | ENSG00000136839 | GTEx |
HGNC ID | HGNC:15104 | ENTREZGENE |
Human Proteome Map | OR13C9 | Human Proteome Map |
InterPro | GPCR_Rhodpsn | UniProtKB/Swiss-Prot |
GPCR_Rhodpsn_7TM | UniProtKB/Swiss-Prot | |
Olfact_rcpt | UniProtKB/Swiss-Prot | |
KEGG Report | hsa:286362 | UniProtKB/Swiss-Prot |
NCBI Gene | 286362 | ENTREZGENE |
Pfam | 7tm_4 | UniProtKB/Swiss-Prot |
PharmGKB | PA32039 | PharmGKB |
PRINTS | GPCRRHODOPSN | UniProtKB/Swiss-Prot |
OLFACTORYR | UniProtKB/Swiss-Prot | |
PROSITE | G_PROTEIN_RECEP_F1_1 | UniProtKB/Swiss-Prot |
G_PROTEIN_RECEP_F1_2 | UniProtKB/Swiss-Prot | |
UniGene | Hs.553682 | ENTREZGENE |
UniProt | A0A126GVC2_HUMAN | UniProtKB/TrEMBL |
O13C9_HUMAN | UniProtKB/Swiss-Prot, ENTREZGENE | |
UniProt Secondary | Q6IFL2 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2015-12-15 | OR13C9 | olfactory receptor family 13 subfamily C member 9 | olfactory receptor, family 13, subfamily C, member 9 | Symbol and/or name change | 5135510 | APPROVED | |
2011-09-01 | OR13C9 | olfactory receptor, family 13, subfamily C, member 9 | OR13C9 | olfactory receptor, family 13, subfamily C, member 9 | Symbol and/or name change | 5135510 | APPROVED |
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More on OR13C9 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: hg19 hg38 |
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HGNC Report |
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NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1353189 |
Created: | 2005-03-08 |
Species: | Homo sapiens |
Last Modified: | 2019-11-26 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.