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Gene: RGD1359108 (similar to RIKEN cDNA 3110043O21) Rattus norvegicus
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Symbol: RGD1359108
Name: similar to RIKEN cDNA 3110043O21
Description: Predicted to contribute to Rab guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including autophagy; negative regulation of GTP binding activity; and regulation of macroautophagy. Predicted to colocalize with the Atg1/ULK1 kinase complex. Human ortholog(s) of this gene implicated in FTDALS1. Orthologous to human C9orf72 (C9orf72-SMCR8 complex subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: guanine nucleotide exchange C9orf72 homolog; hypothetical protein LOC313155; MGC93924; protein C9orf72 homolog; similar to RIKEN cDNA 3110043O21 gene; uncharacterized protein C9orf72 homolog
Orthologs:
Homo sapiens (human) : C9orf72 (C9orf72-SMCR8 complex subunit)  HGNC  Alliance
Mus musculus (house mouse) : C9orf72 (C9orf72, member of C9orf72-SMCR8 complex)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : C9orf72 (C9orf72-SMCR8 complex subunit)
Pan paniscus (bonobo/pygmy chimpanzee) : C9orf72 (C9orf72-SMCR8 complex subunit)
Canis lupus familiaris (dog) : C11H9orf72 (chromosome 11 C9orf72 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : C9orf72 (C9orf72-SMCR8 complex subunit)
Sus scrofa (pig) : C9orf72 (C9orf72-SMCR8 complex subunit)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0550,666,444 - 50,691,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0555,229,460 - 55,254,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,839,724 - 51,865,205 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1551,839,902 - 51,865,384 (-)NCBI
Celera548,510,000 - 48,535,299 (-)NCBICelera
Cytogenetic Map5q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on RGD1359108
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359108
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.