Gene: Pdlim2 (PDZ and LIM domain 2) Rattus norvegicus
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Symbol: Pdlim2
Name: PDZ and LIM domain 2
Description: Exhibits filamin binding activity, muscle alpha-actinin binding activity, and myosin heavy chain binding activity; colocalizes with the cortical actin cytoskeleton and stress fiber; orthologous to human PDLIM2 (PDZ and LIM domain 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alpha-actinins and filamin-interacting protein; MGC94060; PDZ and LIM domain protein 2
Orthologs:
Homo sapiens (human) : PDLIM2 (PDZ and LIM domain 2)  HGNC  Alliance
Mus musculus (house mouse) : Pdlim2 (PDZ and LIM domain 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pdlim2 (PDZ and LIM domain 2)
Pan paniscus (bonobo/pygmy chimpanzee) : PDLIM2 (PDZ and LIM domain 2)
Canis lupus familiaris (dog) : PDLIM2 (PDZ and LIM domain 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pdlim2 (PDZ and LIM domain 2)
Sus scrofa (pig) : PDLIM2 (PDZ and LIM domain 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01551,843,562 - 51,856,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01555,569,716 - 55,582,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,564,108 - 50,575,871 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11550,579,889 - 50,591,651 (-)NCBI
Celera1544,916,943 - 44,928,696 (-)NCBICelera
Cytogenetic Map15p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pdlim2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359203
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.