Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Matn1 (matrilin 1) Rattus norvegicus
Analyze
Symbol: Matn1
Name: matrilin 1
Description: Predicted to have calcium ion binding activity and extracellular matrix structural constituent. Predicted to be involved in growth plate cartilage chondrocyte morphogenesis and regulation of bone mineralization. Predicted to localize to the collagen-containing extracellular matrix and extracellular space. Orthologous to human MATN1 (matrilin 1); INTERACTS WITH bisphenol A; C60 fullerene; aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cartilage matrix protein; matrilin 1, cartilage matrix protein; MGC95132
Orthologs:
Homo sapiens (human) : MATN1 (matrilin 1)  HGNC  Alliance
Mus musculus (house mouse) : Matn1 (matrilin 1, cartilage matrix protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Matn1 (matrilin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : MATN1 (matrilin 1)
Canis lupus familiaris (dog) : MATN1 (matrilin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Matn1 (matrilin 1)
Sus scrofa (pig) : MATN1 (matrilin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05149,077,412 - 149,086,957 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05152,779,325 - 152,788,646 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,805,644 - 149,815,347 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,815,682 - 149,825,386 (+)NCBI
Celera5141,579,297 - 141,588,738 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Matn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359410
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.