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Gene: Vps16 (VPS16 core subunit of CORVET and HOPS complexes) Rattus norvegicus
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Symbol: Vps16
Name: VPS16 core subunit of CORVET and HOPS complexes
Description: Exhibits actin filament binding activity. Predicted to be involved in several processes, including autophagosome maturation; endosome to lysosome transport; and regulation of organelle organization. Localizes to the axon; endosome; and neuronal cell body. Predicted to colocalize with the AP-3 adaptor complex. Orthologous to human VPS16 (VPS16 core subunit of CORVET and HOPS complexes); INTERACTS WITH 2,6-dinitrotoluene; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MGC94090; vacuolar protein sorting 16; vacuolar protein sorting 16 (yeast); vacuolar protein sorting 16 homolog; vacuolar protein sorting 16 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 16 homolog; VPS16 CORVET/HOPS core subunit
Orthologs:
Homo sapiens (human) : VPS16 (VPS16 core subunit of CORVET and HOPS complexes)  HGNC  Alliance
Mus musculus (house mouse) : Vps16 (VSP16 CORVET/HOPS core subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps16 (VPS16 core subunit of CORVET and HOPS complexes)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS16 (VPS16 core subunit of CORVET and HOPS complexes)
Canis lupus familiaris (dog) : VPS16 (VPS16 core subunit of CORVET and HOPS complexes)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps16 (VPS16 core subunit of CORVET and HOPS complexes)
Sus scrofa (pig) : VPS16 (VPS16 core subunit of CORVET and HOPS complexes)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03122,947,887 - 122,969,543 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03129,448,219 - 129,469,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,037,765 - 118,058,841 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13117,943,337 - 117,964,412 (+)NCBI
Celera3116,436,997 - 116,458,059 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vps16
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359414
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.