Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Pms1 (PMS1 homolog 1, mismatch repair system component) Rattus norvegicus
Analyze
Symbol: Pms1
Name: PMS1 homolog 1, mismatch repair system component
Description: Predicted to have ATPase activity and enzyme binding activity. Involved in response to drug. Predicted to localize to MutLalpha complex. Human ortholog(s) of this gene implicated in Lynch syndrome; dermatomyositis; and pancreatic ductal carcinoma. Orthologous to human PMS1 (PMS1 homolog 1, mismatch repair system component); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; INTERACTS WITH 4-hydroperoxycyclophosphamide; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MGC72584; PMS1 postmeiotic segregation increased 1; PMS1 postmeiotic segregation increased 1 (S. cerevisiae); PMS1 protein homolog 1; postmeiotic segregation increased 1; postmeiotic segregation increased 1 (S. cerevisiae); similar to postmeiotic segregation increased 1
Orthologs:
Homo sapiens (human) : PMS1 (PMS1 homolog 1, mismatch repair system component)  HGNC  Alliance
Mus musculus (house mouse) : Pms1 (PMS1 homolog 1, mismatch repair system component)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pms1 (PMS1 homolog 1, mismatch repair system component)
Pan paniscus (bonobo/pygmy chimpanzee) : PMS1 (PMS1 homolog 1, mismatch repair system component)
Canis lupus familiaris (dog) : PMS1 (PMS1 homolog 1, mismatch repair system component)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pms1 (PMS1 homolog 1, mismatch repair system component)
Sus scrofa (pig) : PMS1 (PMS1 homolog 1, mismatch repair system component)
Chlorocebus sabaeus (African green monkey) : PMS1 (PMS1 homolog 1, mismatch repair system component)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0953,120,656 - 53,206,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,120,656 - 53,206,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0952,784,772 - 52,871,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,203,344 - 45,292,624 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1945,204,757 - 45,294,034 (+)NCBI
Celera945,919,538 - 46,005,758 (+)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pms1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359511
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.