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Gene: Cln8 (CLN8, transmembrane ER and ERGIC protein) Rattus norvegicus
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Symbol: Cln8
Name: CLN8, transmembrane ER and ERGIC protein
Description: Predicted to have ceramide binding activity. Predicted to be involved in several processes, including adult walking behavior; glutamate reuptake; and neurofilament cytoskeleton organization. Predicted to localize to endoplasmic reticulum and endoplasmic reticulum-Golgi intermediate compartment. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 8 and neuronal ceroid lipofuscinosis 8 northern epilepsy variant. Orthologous to human CLN8 (CLN8 transmembrane ER and ERGIC protein); INTERACTS WITH bisphenol A; endosulfan; enniatin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ceroid-lipofuscinosis, neuronal 8; ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation); MGC93871
Orthologs:
Homo sapiens (human) : CLN8 (CLN8 transmembrane ER and ERGIC protein)  HGNC  Alliance
Mus musculus (house mouse) : Cln8 (CLN8 transmembrane ER and ERGIC protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cln8 (CLN8 transmembrane ER and ERGIC protein)
Pan paniscus (bonobo/pygmy chimpanzee) : CLN8 (CLN8 transmembrane ER and ERGIC protein)
Canis lupus familiaris (dog) : CLN8 (CLN8 transmembrane ER and ERGIC protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cln8 (CLN8 transmembrane ER and ERGIC protein)
Sus scrofa (pig) : CLN8 (CLN8 transmembrane ER and ERGIC protein)
Chlorocebus sabaeus (African green monkey) : CLN8 (CLN8 transmembrane ER and ERGIC protein)
Heterocephalus glaber (naked mole-rat) : Cln8 (CLN8 transmembrane ER and ERGIC protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01679,828,321 - 79,838,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,828,324 - 79,838,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,403,685 - 79,413,576 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,569,745 - 79,579,636 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11679,570,012 - 79,579,901 (-)NCBI
Celera1672,565,615 - 72,575,506 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cln8
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359518
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.