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Gene: Pef1 (penta-EF hand domain containing 1) Rattus norvegicus
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Symbol: Pef1
Name: penta-EF hand domain containing 1
Description: Predicted to have calcium-dependent protein binding activity; protein heterodimerization activity; and ubiquitin ligase-substrate adaptor activity. Predicted to be involved in several processes, including COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to localize to COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MGC95159; PEF protein with a long N-terminal hydrophobic domain; peflin; penta-EF hand domain-containing protein 1
Orthologs:
Homo sapiens (human) : PEF1 (penta-EF-hand domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Pef1 (penta-EF hand domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pef1 (penta-EF-hand domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PEF1 (penta-EF-hand domain containing 1)
Canis lupus familiaris (dog) : PEF1 (penta-EF-hand domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pef1 (penta-EF-hand domain containing 1)
Sus scrofa (pig) : PEF1 (penta-EF-hand domain containing 1)
Chlorocebus sabaeus (African green monkey) : PEF1 (penta-EF-hand domain containing 1)
Heterocephalus glaber (naked mole-rat) : Pef1 (penta-EF-hand domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05148,320,610 - 148,343,876 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,320,438 - 148,343,886 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,039,088 - 152,062,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,135,320 - 149,158,586 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,145,358 - 149,168,625 (+)NCBI
Celera5140,919,517 - 140,942,783 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pef1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359536
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.