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Gene: Sp100 (SP100 nuclear antigen) Rattus norvegicus
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Symbol: Sp100
Name: SP100 nuclear antigen
Description: Predicted to have several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; chromo shadow domain binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including innate immune response; regulation of signal transduction; and regulation of transcription, DNA-templated. Predicted to colocalize with Mre11 complex. Orthologous to human SP100 (SP100 nuclear antigen); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC363269; nuclear antigen Sp100; nuclear autoantigen Sp-100; similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear dot-associated Sp100 protein)
Orthologs:
Homo sapiens (human) : SP100 (SP100 nuclear antigen)  HGNC  Alliance
Mus musculus (house mouse) : Sp100 (nuclear antigen Sp100)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sp100 (SP100 nuclear antigen)
Pan paniscus (bonobo/pygmy chimpanzee) : SP100 (SP100 nuclear antigen)
Canis lupus familiaris (dog) : SP100 (SP100 nuclear antigen)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sp100 (SP100 nuclear antigen)
Sus scrofa (pig) : LOC100517129 (nuclear body protein SP140-like protein)
Chlorocebus sabaeus (African green monkey) : SP100 (SP100 nuclear antigen)
Heterocephalus glaber (naked mole-rat) : Sp100 (SP100 nuclear antigen)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0992,675,103 - 92,718,489 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,681,078 - 92,717,929 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0990,732,749 - 90,750,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0992,405,689 - 92,449,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,374,288 - 84,409,976 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1984,557,706 - 84,593,391 (+)NCBI
Celera983,734,331 - 83,769,903 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sp100
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359550
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.