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Gene: Atg5 (autophagy related 5) Rattus norvegicus
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Symbol: Atg5
Name: autophagy related 5
Description: Involved in several processes, including chaperone-mediated autophagy; response to fluoride; and response to iron(II) ion. Localizes to axon and protein-containing complex. Biomarker of ischemia. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 25. Orthologous to human ATG5 (autophagy related 5); PARTICIPATES IN autophagy pathway; Retinoic acid-inducible gene (RIG) I-like receptor signaling pathway; INTERACTS WITH 3-methyladenine; 4'-epidoxorubicin; 4-nonylphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: APG5 autophagy 5-like; ATG5 autophagy related 5 homolog; ATG5 autophagy related 5 homolog (S. cerevisiae); autophagy protein 5; LOC365601; similar to autophagy 5-like
Orthologs:
Homo sapiens (human) : ATG5 (autophagy related 5)  HGNC  Alliance
Mus musculus (house mouse) : Atg5 (autophagy related 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg5 (autophagy related 5)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG5 (autophagy related 5)
Canis lupus familiaris (dog) : ATG5 (autophagy related 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg5 (autophagy related 5)
Sus scrofa (pig) : ATG5 (autophagy related 5)
Chlorocebus sabaeus (African green monkey) : ATG5 (autophagy related 5)
Heterocephalus glaber (naked mole-rat) : Atg5 (autophagy related 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02049,301,783 - 49,393,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2049,318,308 - 49,393,140 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02050,934,688 - 51,026,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42048,273,977 - 48,366,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12048,302,673 - 48,395,435 (+)NCBI
Celera2052,117,260 - 52,207,732 (-)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atg5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1359580
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.