Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: COL5A2 (collagen type V alpha 2 chain) Sus scrofa
Analyze
Symbol: COL5A2
Name: collagen type V alpha 2 chain
Description: ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); SMAD binding (inferred); INVOLVED IN cellular response to amino acid stimulus (inferred); collagen fibril organization (inferred); eye morphogenesis (inferred); PARTICIPATES IN cell-extracellular matrix signaling pathway; Entamoebiasis pathway; syndecan signaling pathway; ASSOCIATED WITH aortic disease (ortholog); atrial heart septal defect (ortholog); autosomal recessive progressive external ophthalmoplegia 1 (ortholog); FOUND IN collagen trimer (inferred); collagen type V trimer (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-2(V) chain
Orthologs:
Homo sapiens (human) : COL5A2 (collagen type V alpha 2 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col5a2 (collagen, type V, alpha 2)  MGI  Alliance
Rattus norvegicus (Norway rat) : Col5a2 (collagen type V alpha 2 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col5a2 (collagen type V alpha 2 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL5A2 (collagen type V alpha 2 chain)
Canis lupus familiaris (dog) : COL5A2 (collagen type V alpha 2 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col5a2 (collagen type V alpha 2 chain)
Chlorocebus sabaeus (African green monkey) : COL5A2 (collagen type V alpha 2 chain)
Heterocephalus glaber (naked mole-rat) : Col5a2 (collagen type V alpha 2 chain)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1593,611,856 - 93,981,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11593,611,856 - 93,981,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215104,122,882 - 104,272,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - uncurated

Genomics

Comparative Map Data

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences

Additional Information

External Database Links
 
More on COL5A2
NCBI Gene
Ensembl Gene
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 13873129
Created: 2019-01-29
Species: Sus scrofa
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.