Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: COL2A1 (collagen type II alpha 1 chain) Sus scrofa
Analyze
Symbol: COL2A1
Name: collagen type II alpha 1 chain
Description: ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); identical protein binding (inferred); MHC class II protein binding (inferred); INVOLVED IN anterior head development (inferred); cartilage condensation (inferred); cartilage development involved in endochondral bone morphogenesis (inferred); PARTICIPATES IN cell-extracellular matrix signaling pathway; Entamoebiasis pathway; syndecan signaling pathway; ASSOCIATED WITH achondrogenesis type II (ortholog); Animal Disease Models (ortholog); arthritis (ortholog); FOUND IN basement membrane (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital); LOW QUALITY PROTEIN: collagen alpha-1(II) chain; type II collagen alpha 1; type II collagen alpha1
Orthologs:
Homo sapiens (human) : COL2A1 (collagen type II alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col2a1 (collagen, type II, alpha 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Col2a1 (collagen type II alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col2a1 (collagen type II alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL2A1 (collagen type II alpha 1 chain)
Canis lupus familiaris (dog) : COL2A1 (collagen type II alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col2a1 (collagen type II alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL2A1 (collagen type II alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col2a1 (collagen type II alpha 1 chain)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,350,220 - 78,380,924 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,350,131 - 78,380,893 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,530,406 - 81,554,481 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - uncurated

Genomics

Comparative Map Data

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences

Additional Information

External Database Links
 
More on COL2A1
NCBI Gene
Ensembl Gene
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 14284701
Created: 2019-01-29
Species: Sus scrofa
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.