Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: COL1A1 (collagen type I alpha 1 chain) Sus scrofa
Analyze
Symbol: COL1A1
Name: collagen type I alpha 1 chain
Description: ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH aggressive periodontitis (ortholog); alcoholic hepatitis (ortholog); aortic valve insufficiency (ortholog); INTERACTS WITH Bisphenol A diglycidyl ether; dexamethasone; dibromine
Type: protein-coding
RefSeq Status: MODEL
Also known as: alpha1 chain of type I collagen; collagen alpha-1(I) chain; collagen type I alpha 1
Orthologs:
Homo sapiens (human) : COL1A1 (collagen type I alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col1a1 (collagen, type I, alpha 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Col1a1 (collagen type I alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col1a1 (collagen type I alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL1A1 (collagen type I alpha 1 chain)
Canis lupus familiaris (dog) : COL1A1 (collagen type I alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col1a1 (collagen type I alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL1A1 (collagen type I alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col1a1 (collagen type I alpha 1 chain)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,379,090 - 26,397,003 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,379,087 - 26,397,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - uncurated

Genomics

Comparative Map Data

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences

Additional Information

External Database Links
 
More on COL1A1
NCBI Gene
Ensembl Gene
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 14297975
Created: 2019-01-29
Species: Sus scrofa
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.