Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Myocardial Ischemia | ISO | RGD:1345480 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:16214533 |



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Imported Annotations - CTD | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Myocardial Ischemia | ISO | RGD:1345480 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:16214533 |
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1. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | MGD data from the GO Consortium |
3. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | RGD automated import pipeline |
5. | RGD automated import pipeline for gene-chemical interactions |
PubMed | 7642711 10349636 10922068 11042159 11076861 11773082 11856727 12477932 12578829 14610273 15489334 15782199 16141072 16141073 16923123 17967808 18614015 18799693 18842593 20059953 21187406 21873635 24457600 28378742 28520221 |
Rab1b (Mus musculus - house mouse) |
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RAB1B (Homo sapiens - human) |
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Rab1b (Rattus norvegicus - Norway rat) |
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Rab1b (Chinchilla lanigera - long-tailed chinchilla) |
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RAB1B (Pan paniscus - bonobo/pygmy chimpanzee) |
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RAB1B (Canis lupus familiaris - dog) |
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Rab1b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RAB1B (Sus scrofa - pig) |
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AW212649 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_029576 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AB232584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC124502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK003609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK042020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK156726 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK200798 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK205715 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK208578 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK209428 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK211449 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK212653 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK214573 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK215051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK215506 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK215541 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK220106 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC016408 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466612 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_029576 ⟹ NP_083852 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
GGAACGGGAGGCGGAGCAGAGCCGACTGGGAGCGACCGAGCGGGCCACCGCTGCCGCCATGAAChide sequence |
Protein RefSeqs | NP_083852 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH16408 | (Get FASTA) | NCBI Sequence Viewer |
BAB22888 | (Get FASTA) | NCBI Sequence Viewer | |
BAE20616 | (Get FASTA) | NCBI Sequence Viewer | |
BAE33821 | (Get FASTA) | NCBI Sequence Viewer | |
BAF02846 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33103 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33104 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33105 | (Get FASTA) | NCBI Sequence Viewer | |
Q9D1G1 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_083852 ⟸ NM_029576 |
- UniProtKB: | Q9D1G1 (UniProtKB/Swiss-Prot), Q0PD66 (UniProtKB/TrEMBL) |
- Sequence: |
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDThide sequence |
RGD ID: | 6847584 | |||||||||
Promoter ID: | MM_ACW:25828 | |||||||||
Type: | Non-CpG | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | 3T3L1_Day6 | |||||||||
Transcripts: | RAB1B.ASEP07 | |||||||||
Position: |
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RGD ID: | 6830350 | |||||||||
Promoter ID: | MM_KWN:26055 | |||||||||
Type: | CpG-Island | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6 | |||||||||
Transcripts: | ENSMUST00000025804 | |||||||||
Position: |
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RGD ID: | 13678492 | |||||||||
Promoter ID: | EPDNEW_M23395 | |||||||||
Type: | initiation region | |||||||||
Name: | Rab1b_1 | |||||||||
Description: | Mus musculus RAB1B, member RAS oncogene family , mRNA. | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1923558 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000024870 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSMUSP00000025804 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUSP00000157487 | UniProtKB/TrEMBL | |
ENSMUSP00000157879 | UniProtKB/TrEMBL | |
ENSMUSP00000158567 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000025804 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUST00000236149 | UniProtKB/TrEMBL | |
ENSMUST00000237201 | UniProtKB/TrEMBL | |
ENSMUST00000237438 | UniProtKB/TrEMBL | |
InterPro | P-loop_NTPase | UniProtKB/Swiss-Prot |
Small_GTP-bd_dom | UniProtKB/Swiss-Prot | |
Small_GTPase | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:76308 | UniProtKB/Swiss-Prot |
MGD | MGI:1923558 | ENTREZGENE |
NCBI Gene | 76308 | ENTREZGENE |
Pfam | Ras | UniProtKB/Swiss-Prot |
PhenoGen | Rab1b | PhenoGen |
PROSITE | RAB | UniProtKB/Swiss-Prot |
Superfamily-SCOP | SSF52540 | UniProtKB/Swiss-Prot |
TIGRFAMs | small_GTP | UniProtKB/Swiss-Prot |
UniGene | Mm.182563 | ENTREZGENE |
Mm.297430 | ENTREZGENE | |
UniProt | A0A494B945_MOUSE | UniProtKB/TrEMBL |
A0A494BA38_MOUSE | UniProtKB/TrEMBL | |
A0A494BBL7_MOUSE | UniProtKB/TrEMBL | |
Q0PD66 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3V3C2_MOUSE | UniProtKB/TrEMBL | |
Q9D1G1 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q3U0N1 | UniProtKB/Swiss-Prot |
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More on Rab1b | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: mm9 mm10 |
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MGI Report |
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NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1553174 |
Created: | 2005-09-30 |
Species: | Mus musculus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
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