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![]() Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17beta-estradiol | multiple interactions | ISO | RGD:1350501 | 6480464 | [Estradiol co-treated with Progesterone] results in increased expression of GGTA1 mRNA | CTD | PMID:20660070 | 2,2',4,4',5,5'-hexachlorobiphenyl | decreases expression | ISO | RGD:1350501 | 6480464 | 2 more ... | CTD | PMID:23146750 | 2,2',4,4'-Tetrabromodiphenyl ether | decreases expression | ISO | RGD:1350501 | 6480464 | 2 more ... | CTD | PMID:23146750 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in increased expression of GGTA1 mRNA | CTD | PMID:19770486 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | EXP | | 6480464 | Tetrachlorodibenzodioxin affects the expression of GGTA1 mRNA | CTD | PMID:21570461 | 2,4,6-trinitrobenzenesulfonic acid | multiple interactions | EXP | | 6480464 | Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of GGTA1 mRNA] | CTD | PMID:18200517 | 2,4,6-trinitrobenzenesulfonic acid | increases expression | EXP | | 6480464 | Trinitrobenzenesulfonic Acid results in increased expression of GGTA1 mRNA | CTD | PMID:18200517 | 2,6-di-tert-butyl-4-methylphenol | increases expression | EXP | | 6480464 | Butylated Hydroxytoluene results in increased expression of GGTA1 mRNA | CTD | PMID:19925653 | 3,3',4,4',5-pentachlorobiphenyl | decreases expression | ISO | RGD:1350501 | 6480464 | 3 more ... | CTD | PMID:23146750 | 4,4'-diaminodiphenylmethane | increases expression | ISO | RGD:629476 | 6480464 | 4, 4'-diaminodiphenylmethane results in increased expression of GGTA1 mRNA | CTD | PMID:25380136 | 4,4'-sulfonyldiphenol | multiple interactions | EXP | | 6480464 | [bis(4-hydroxyphenyl)sulfone co-treated with Tretinoin] results in decreased expression of GGTA1 mRNA | CTD | PMID:30951980 | 4-hydroxyphenyl retinamide | increases expression | EXP | | 6480464 | Fenretinide results in increased expression of GGTA1 mRNA | CTD | PMID:28973697 | 6-propyl-2-thiouracil | increases expression | ISO | RGD:629476 | 6480464 | Propylthiouracil results in increased expression of GGTA1 mRNA, Propylthiouracil results in increased expression of GGTA1P mRNA | CTD | PMID:22504374, PMID:24780913 | aflatoxin B1 | increases expression | EXP | | 6480464 | Aflatoxin B1 results in increased expression of GGTA1 mRNA | CTD | PMID:19770486 | aflatoxin B1 | increases methylation | ISO | RGD:1350501 | 6480464 | Aflatoxin B1 results in increased methylation of GGTA1P intron | CTD | PMID:30157460 | all-trans-retinoic acid | multiple interactions | EXP | | 6480464 | [bis(4-hydroxyphenyl)sulfone co-treated with Tretinoin] results in decreased expression of GGTA1 mRNA more ... | CTD | PMID:30951980 | ammonium chloride | affects expression | ISO | RGD:629476 | 6480464 | Ammonium Chloride affects the expression of GGTA1 mRNA | CTD | PMID:16483693 | Aroclor 1254 | decreases expression | EXP | | 6480464 | Chlorodiphenyl (54% Chlorine) results in decreased expression of GGTA1 mRNA | CTD | PMID:23650126 | arsane | decreases expression | EXP | | 6480464 | Arsenic results in decreased expression of GGTA1 mRNA | CTD | PMID:19654921 | arsenic atom | decreases expression | EXP | | 6480464 | Arsenic results in decreased expression of GGTA1 mRNA | CTD | PMID:19654921 | benzo[a]pyrene | decreases expression | ISO | RGD:1350501 | 6480464 | Benzo(a)pyrene results in decreased expression of GGTA1P mRNA | CTD | PMID:20064835 | benzo[a]pyrene | increases expression | EXP | | 6480464 | Benzo(a)pyrene results in increased expression of GGTA1 mRNA | CTD | PMID:19770486, PMID:22228805 | bis(2-ethylhexyl) phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | bisphenol A | affects expression | ISO | RGD:629476 | 6480464 | bisphenol A affects the expression of GGTA1 mRNA | CTD | PMID:25181051 | bisphenol A | multiple interactions | EXP | | 6480464 | [bisphenol A co-treated with Tretinoin] results in decreased expression of GGTA1 mRNA | CTD | PMID:30951980 | bisphenol A | increases expression | EXP | | 6480464 | bisphenol A results in increased expression of GGTA1 mRNA | CTD | PMID:29161229 | bisphenol F | multiple interactions | EXP | | 6480464 | [bisphenol F co-treated with Tretinoin] results in decreased expression of GGTA1 mRNA | CTD | PMID:30951980 | Butylbenzyl phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | cisplatin | decreases expression | ISO | RGD:629476 | 6480464 | Cisplatin results in decreased expression of GGTA1 mRNA | CTD | PMID:22023808 | curcumin | multiple interactions | EXP | | 6480464 | Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of GGTA1 mRNA] | CTD | PMID:18200517 | dexamethasone | increases expression | EXP | | 6480464 | Dexamethasone results in increased expression of GGTA1 mRNA | CTD | PMID:22733784 | dibutyl phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | diethyl phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | diisobutyl phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | diisononyl phthalate | multiple interactions | ISO | RGD:629476 | 6480464 | [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of GGTA1 mRNA | CTD | PMID:31199487 | dorsomorphin | multiple interactions | ISO | RGD:1350501 | 6480464 | [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GGTA1P mRNA | CTD | PMID:27188386 | endosulfan | increases expression | ISO | RGD:629476 | 6480464 | Endosulfan results in increased expression of GGTA1 mRNA | CTD | PMID:29391264 | methimazole | increases expression | ISO | RGD:629476 | 6480464 | Methimazole results in increased expression of GGTA1P mRNA | CTD | PMID:22504374 | mifepristone | multiple interactions | ISO | RGD:1350501 | 6480464 | Mifepristone inhibits the reaction [Progesterone affects the expression of GGTA1P mRNA] | CTD | PMID:22414680 | N-nitrosodiethylamine | increases expression | EXP | | 6480464 | Diethylnitrosamine results in increased expression of GGTA1 mRNA | CTD | PMID:24535843 | N-nitrosodimethylamine | increases expression | ISO | RGD:629476 | 6480464 | Dimethylnitrosamine results in increased expression of GGTA1 mRNA | CTD | PMID:25380136 | oxaliplatin | multiple interactions | ISO | RGD:629476 | 6480464 | [oxaliplatin co-treated with Topotecan] results in decreased expression of GGTA1 mRNA | CTD | PMID:25729387 | paracetamol | affects expression | EXP | | 6480464 | Acetaminophen affects the expression of GGTA1 mRNA | CTD | PMID:17562736 | progesterone | multiple interactions | ISO | RGD:1350501 | 6480464 | [Estradiol co-treated with Progesterone] results in increased expression of GGTA1 mRNA, Mifepristone inhibits the reaction [Progesterone affects the expression of GGTA1P mRNA] | CTD | PMID:20660070, PMID:22414680 | SB 431542 | multiple interactions | ISO | RGD:1350501 | 6480464 | [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GGTA1P mRNA | CTD | PMID:27188386 | Soman | increases expression | ISO | RGD:629476 | 6480464 | Soman results in increased expression of GGTA1P mRNA | CTD | PMID:19281266 | topotecan | multiple interactions | ISO | RGD:629476 | 6480464 | [oxaliplatin co-treated with Topotecan] results in decreased expression of GGTA1 mRNA | CTD | PMID:25729387 | troglitazone | increases expression | EXP | | 6480464 | troglitazone results in increased expression of GGTA1 mRNA | CTD | PMID:28973697 | valproic acid | increases methylation | ISO | RGD:1350501 | 6480464 | Valproic Acid results in increased methylation of GGTA1P gene | CTD | PMID:29154799 | valproic acid | multiple interactions | ISO | RGD:1350501 | 6480464 | [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GGTA1P mRNA | CTD | PMID:27188386 | valproic acid | increases expression | ISO | RGD:1350501 | 6480464 | Valproic Acid results in increased expression of GGTA1P mRNA | CTD | PMID:24383497, PMID:26272509 | vinclozolin | affects expression | ISO | RGD:629476 | 6480464 | vinclozolin affects the expression of GGTA1 mRNA | CTD | PMID:19015723 | |
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1. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | MGD data from the GO Consortium |
3. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | Pipeline to import KEGG annotations from KEGG into RGD |
5. | RGD automated import pipeline |
6. | RGD automated import pipeline for gene-chemical interactions |
PubMed | 1544928 1901427 2510162 3119716 3121614 7545089 7545161 7556898 7774911 7878986 8061165 8130389 8623306 9771838 10349636 10430609 10755549 10910282 10922068 10936237 10936238 11005319 11042159 11049978 11067905 11076861 11090880 11122450 11130978 11179209 11267031 11696457 11801692 12042639 12406874 12477932 12626403 14610273 14681479 14743001 14966409 15161001 15187097 16082726 16141072 16141073 16332269 16456004 16764697 17023586 17082620 17724458 17967808 18322191 18348765 18799693 20173026 20530670 21357545 21696447 21873635 22425450 23740988 23943651 25128705 25480293 25681390 27989076 28472163 |
Ggta1 (Mus musculus - house mouse) |
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GGTA1P (Homo sapiens - human) |
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Ggta1 (Rattus norvegicus - Norway rat) |
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GGTA1P (Pan paniscus - bonobo/pygmy chimpanzee) |
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GGTA1P (Canis lupus familiaris - dog) |
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GGTA1P (Sus scrofa - pig) |
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AW108479 |
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D2Mit515 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001145821 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001308299 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001308300 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_010283 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006497720 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011239026 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011239027 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011239028 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011239029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030247542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030247543 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030247544 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030247545 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AF297615 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AH011008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK004753 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK088605 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK159087 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL929076 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL929199 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC006810 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BE136462 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M26925 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M85153 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_001145821 ⟹ NP_001139293 | ||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
AGCTCCTCCCTCAGGAAGGACCCCAGGGACTCTTATTTTTGTAGTTTTGCTTGTCTGGGCCACThide sequence |
RefSeq Acc Id: | NM_001308299 ⟹ NP_001295228 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
AGCTCCTCCCTCAGGAAGGACCCCAGGGACTCTTATTTTTGTAGTTTTGCTTGTCTGGGCCACThide sequence |
RefSeq Acc Id: | NM_001308300 ⟹ NP_001295229 | |||||||||
RefSeq Status: | REVIEWED | |||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
AGCTCCTCCCTCAGGAAGGACCCCAGGGACTCTTATTTTTGTAGTTTTGCTTGTCTGGGCCACThide sequence |
RefSeq Acc Id: | NM_010283 ⟹ NP_034413 | ||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
AGCTCCTCCCTCAGGAAGGACCCCAGGGACTCTTATTTTTGTAGTTTTGCTTGTCTGGGCCACThide sequence |
RefSeq Acc Id: | XM_006497720 ⟹ XP_006497783 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
TAGCTCCTCCCTCAGGAAGGACCCCAGGGACTCTTATTTTTGTAGTTTTGCTTGTCTGGGCCAChide sequence |
RefSeq Acc Id: | XM_011239026 ⟹ XP_011237328 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
CCTCCTCTGCAGCCCCTATCACCATGGGCAGGTCAGAAGACACAGGCGGCCGTGAGCGATTTCThide sequence |
RefSeq Acc Id: | XM_011239027 ⟹ XP_011237329 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
TTATTTGCAAGTCAATACCAGCAAGCACACTTGAAGCCACCTCTCCTGGCAGTTTATATCTACChide sequence |
RefSeq Acc Id: | XM_011239028 ⟹ XP_011237330 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GGTTGGGTGTTCCTTTTTGCGTCAAGCTTGCTGACGGCAGCTAAGGAAGCTGAAGACTGTGTTGhide sequence |
RefSeq Acc Id: | XM_011239029 ⟹ XP_011237331 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
TAATTAAGAAAATGGCCTACAGCTGGATCTTAAGGAGGTATTCTCTTCATTGAGGTTTCCTCCThide sequence |
RefSeq Acc Id: | XM_030247542 ⟹ XP_030103402 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | XM_030247543 ⟹ XP_030103403 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | XM_030247544 ⟹ XP_030103404 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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RefSeq Acc Id: | XM_030247545 ⟹ XP_030103405 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Protein RefSeqs | NP_001139293 | (Get FASTA) | NCBI Sequence Viewer |
NP_001295228 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001295229 | (Get FASTA) | NCBI Sequence Viewer | |
NP_034413 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006497783 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011237328 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011237329 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011237330 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011237331 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030103402 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030103403 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030103404 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030103405 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA37657 | (Get FASTA) | NCBI Sequence Viewer |
AAA37711 | (Get FASTA) | NCBI Sequence Viewer | |
AAH06810 | (Get FASTA) | NCBI Sequence Viewer | |
AAK97205 | (Get FASTA) | NCBI Sequence Viewer | |
AAK97206 | (Get FASTA) | NCBI Sequence Viewer | |
BAB23534 | (Get FASTA) | NCBI Sequence Viewer | |
BAC40449 | (Get FASTA) | NCBI Sequence Viewer | |
BAE34805 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08654 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08655 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08656 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08657 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08658 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08659 | (Get FASTA) | NCBI Sequence Viewer | |
P23336 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_034413 ⟸ NM_010283 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | NP_001139293 ⟸ NM_001145821 |
- Peptide Label: | isoform 2 |
- UniProtKB: | P23336 (UniProtKB/Swiss-Prot), Q3TXW0 (UniProtKB/TrEMBL), Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNRIPhide sequence |
RefSeq Acc Id: | XP_006497783 ⟸ XM_006497720 |
- Peptide Label: | isoform X5 |
- Sequence: |
MRTHSYQEDNVEGRREKGRNGDRIEEPQLWDWFNPKNRPDVLTVTPWKAPIVWEGTYDTALLEKhide sequence |
RefSeq Acc Id: | XP_011237331 ⟸ XM_011239029 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | XP_011237328 ⟸ XM_011239026 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | XP_011237329 ⟸ XM_011239027 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | XP_011237330 ⟸ XM_011239028 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | NP_001295229 ⟸ NM_001308300 |
- Peptide Label: | isoform 4 |
- UniProtKB: | Q91W00 (UniProtKB/TrEMBL), Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNRTHhide sequence |
RefSeq Acc Id: | NP_001295228 ⟸ NM_001308299 |
- Peptide Label: | isoform 3 |
- UniProtKB: | Q8C2H7 (UniProtKB/TrEMBL), Q9DBU1 (UniProtKB/TrEMBL) |
- Sequence: |
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEhide sequence |
RefSeq Acc Id: | XP_030103404 ⟸ XM_030247544 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_030103405 ⟸ XM_030247545 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_030103402 ⟸ XM_030247542 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_030103403 ⟸ XM_030247543 |
- Peptide Label: | isoform X3 |
RGD ID: | 6831439 | |||||||||
Promoter ID: | MM_KWN:28889 | |||||||||
Type: | Non-CpG | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, Kidney, Lung | |||||||||
Transcripts: | ENSMUST00000079424 | |||||||||
Position: |
|
RGD ID: | 6831442 | |||||||||
Promoter ID: | MM_KWN:28891 | |||||||||
Type: | Non-CpG | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, Lung | |||||||||
Transcripts: | OTTMUST00000029163 | |||||||||
Position: |
|
RGD ID: | 6831438 | |||||||||
Promoter ID: | MM_KWN:28892 | |||||||||
Type: | CpG-Island | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Lung, MEF_B4, MEF_B6, Spleen | |||||||||
Transcripts: | ENSMUST00000102794, ENSMUST00000113000, ENSMUST00000113001, OTTMUST00000028946 | |||||||||
Position: |
|
RGD ID: | 6831441 | |||||||||
Promoter ID: | MM_KWN:28893 | |||||||||
Type: | CpG-Island | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | MPROMDB | |||||||||
Tissues & Cell Lines: | 3T3L1_Day0, BoneMarrow_0Hour, BoneMarrow_2Hour | |||||||||
Transcripts: | OTTMUST00000029162 | |||||||||
Position: |
|
RGD ID: | 6877134 | |||||||||
Promoter ID: | EPDNEW_M2018 | |||||||||
Type: | multiple initiation site | |||||||||
Name: | Ggta1_2 | |||||||||
Description: | Mus musculus glycoprotein galactosyltransferase alpha 1, 3 ,transcript variant 4, mRNA. | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
|
RGD ID: | 6877136 | |||||||||
Promoter ID: | EPDNEW_M2019 | |||||||||
Type: | initiation region | |||||||||
Name: | Ggta1_1 | |||||||||
Description: | Mus musculus glycoprotein galactosyltransferase alpha 1, 3 ,transcript variant 4, mRNA. | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | MGI:95704 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000035778 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSMUSP00000049408 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUSP00000078393 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUSP00000099858 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUSP00000108625 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUSP00000108626 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSMUSP00000115112 | UniProtKB/TrEMBL | |
ENSMUSP00000132408 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSMUST00000044255 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUST00000079424 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000102794 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000113001 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000113002 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSMUST00000131745 | UniProtKB/TrEMBL | |
ENSMUST00000164889 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 3.90.550.10 | UniProtKB/Swiss-Prot |
InterPro | Glyco_trans_6 | UniProtKB/Swiss-Prot |
Nucleotide-diphossugar_trans | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:14594 | UniProtKB/Swiss-Prot |
MGD | MGI:95704 | ENTREZGENE |
NCBI Gene | 14594 | ENTREZGENE |
PANTHER | PTHR10462 | UniProtKB/Swiss-Prot |
Pfam | Glyco_transf_6 | UniProtKB/Swiss-Prot |
PhenoGen | Ggta1 | PhenoGen |
Superfamily-SCOP | SSF53448 | UniProtKB/Swiss-Prot |
UniGene | Mm.281124 | ENTREZGENE |
UniProt | B2FDI6_MOUSE | UniProtKB/TrEMBL |
GGTA1_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE | |
Q3TXW0 | ENTREZGENE, UniProtKB/TrEMBL | |
Q8C2H7 | ENTREZGENE, UniProtKB/TrEMBL | |
Q91W00 | ENTREZGENE, UniProtKB/TrEMBL | |
Q9DBU1 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | A2AUR0 | UniProtKB/TrEMBL |
Q91V22 | UniProtKB/Swiss-Prot |
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More on Ggta1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: mm9 mm10 |
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MGI Report |
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NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1553353 |
Created: | 2005-09-30 |
Species: | Mus musculus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.