Snord60 (small nucleolar RNA, C/D box 60) - Chinchilla Research Resource Database
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Gene: Snord60 (small nucleolar RNA, C/D box 60) Mus musculus
Analyze
Symbol: Snord60
Name: small nucleolar RNA, C/D box 60
CRRD ID: 15554235
Description: Involved in intracellular cholesterol transport; INTERACTS WITH bisphenol A (ortholog); cisplatin (ortholog); nickel sulfate (ortholog).
Type: snorna
RefSeq Status: MODEL
Also known as: Gm23519; LOC115488833; small nucleolar RNA SNORD60
Orthologs:
Latest Assembly: GRCm38.p6 Ensembl - Mouse Genome Assembly GRCm38 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,747,450 - 24,747,527 (+)NCBI
GRCm381724,528,476 - 24,528,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,528,476 - 24,528,553 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:24174535  


Genomics

Comparative Map Data
Snord60
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,747,450 - 24,747,527 (+)NCBI
GRCm381724,528,476 - 24,528,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,528,476 - 24,528,553 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17A3.3NCBI
SNORD60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl162,155,023 - 2,155,105 (-)EnsemblGRCh38hg38GRCh38
GRCh38162,155,023 - 2,155,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37162,205,024 - 2,205,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,145,025 - 2,145,107 (-)NCBINCBI36hg18NCBI36
Build 34162,145,024 - 2,145,107NCBI
Celera162,419,443 - 2,419,525 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,131,291 - 2,131,373 (-)NCBIHuRef
CHM1_1162,204,999 - 2,205,081 (-)NCBICHM1_1


QTLs in Region (GRCm38.p6 Ensembl)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172268105525502498Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:60
Interacting mature miRNAs:60
Transcripts:ENSMUST00000082834
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082834
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1724,528,476 - 24,528,553 (+)Ensembl
RefSeq Acc Id: XR_004939753
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,747,450 - 24,747,527 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064768 Ensembl, ENTREZGENE
MGD MGI:5453296 ENTREZGENE
NCBI Gene LOC115488833 ENTREZGENE
PhenoGen Snord60 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Snord60  small nucleolar RNA, C/D box 60  LOC115488833  small nucleolar RNA SNORD60  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115488833  small nucleolar RNA SNORD60  Snord60  small nucleolar RNA, C/D box 60  Symbol and/or name change 5135510 APPROVED
2020-06-25 Snord60  small nucleolar RNA, C/D box 60  LOC115488833  small nucleolar RNA SNORD60  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115488833  small nucleolar RNA SNORD60  Snord60  small nucleolar RNA, C/D box 60  Symbol and/or name change 5135510 APPROVED