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Gene: Zmat5 (zinc finger, matrin type 5) Rattus norvegicus
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Symbol: Zmat5
Name: zinc finger, matrin type 5
CRRD ID: 1559774
Description: Predicted to have zinc ion binding activity. Predicted to localize to U12-type spliceosomal complex and nucleoplasm. Orthologous to human ZMAT5 (zinc finger matrin-type 5); INTERACTS WITH bisphenol A; toluene; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC501926; RGD1559774; similar to RIKEN cDNA 2610510L01; zinc finger matrin-type protein 5
Orthologs:
Homo sapiens (human) : ZMAT5 (zinc finger matrin-type 5)  HGNC  Alliance
Mus musculus (house mouse) : Zmat5 (zinc finger, matrin type 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Zmat5 (zinc finger matrin-type 5)
Pan paniscus (bonobo/pygmy chimpanzee) : ZMAT5 (zinc finger matrin-type 5)
Canis lupus familiaris (dog) : ZMAT5 (zinc finger matrin-type 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Zmat5 (zinc finger matrin-type 5)
Sus scrofa (pig) : ZMAT5 (zinc finger matrin-type 5)
Chlorocebus sabaeus (African green monkey) : ZMAT5 (zinc finger matrin-type 5)
Heterocephalus glaber (naked mole-rat) : Zmat5 (zinc finger matrin-type 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01484,937,843 - 84,968,898 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,953,786 - 84,969,116 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,682 - 85,645,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,370,610 - 85,386,181 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1478,473,939 - 78,504,972 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Zmat5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1559774
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.