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Gene: Rpgr (retinitis pigmentosa GTPase regulator) Rattus norvegicus
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Symbol: Rpgr
Name: retinitis pigmentosa GTPase regulator
Description: Predicted to be involved in several processes, including cilium organization; eye morphogenesis; and visual perception. Localizes to cilium. Human ortholog(s) of this gene implicated in X-linked cone-rod dystrophy 1; retinitis pigmentosa; and retinitis pigmentosa 3. Orthologous to human RPGR (retinitis pigmentosa GTPase regulator); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH 1,2-dimethylhydrazine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC187915; X-linked retinitis pigmentosa GTPase regulator
Orthologs:
Homo sapiens (human) : RPGR (retinitis pigmentosa GTPase regulator)  HGNC  Alliance
Mus musculus (house mouse) : Rpgr (retinitis pigmentosa GTPase regulator)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rpgr (retinitis pigmentosa GTPase regulator)
Pan paniscus (bonobo/pygmy chimpanzee) : RPGR (retinitis pigmentosa GTPase regulator)
Canis lupus familiaris (dog) : RPGR (retinitis pigmentosa GTPase regulator)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rpgr (retinitis pigmentosa GTPase regulator)
Sus scrofa (pig) : RPGR (retinitis pigmentosa GTPase regulator)
Chlorocebus sabaeus (African green monkey) : RPGR (retinitis pigmentosa GTPase regulator)
Heterocephalus glaber (naked mole-rat) : Rpgr (retinitis pigmentosa GTPase regulator)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X14,271,012 - 14,331,745 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,271,017 - 14,331,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,092,648 - 15,113,954 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X15,053,729 - 15,077,792 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X24,722,378 - 24,782,679 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX13,178,490 - 13,236,459 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Rpgr
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560136
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.