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Gene: Nphp4 (nephrocystin 4) Rattus norvegicus
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Symbol: Nphp4
Name: nephrocystin 4
Description: Predicted to be involved in several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and positive regulation of bicellular tight junction assembly. Localizes to the ciliary basal body. Human ortholog(s) of this gene implicated in Joubert syndrome 4; Senior-Loken syndrome; congenital heart disease; nephronophthisis; and nephronophthisis 4. Orthologous to human NPHP4 (nephrocystin 4); INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC313749; MGC125230; nephrocystin-4; nephronophthisis 4; nephronophthisis 4 (juvenile) homolog; nephronophthisis 4 (juvenile) homolog (human); similar to mKIAA0673 protein
Orthologs:
Homo sapiens (human) : NPHP4 (nephrocystin 4)  HGNC  Alliance
Mus musculus (house mouse) : Nphp4 (nephronophthisis 4 (juvenile) homolog (human))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nphp4 (nephrocystin 4)
Pan paniscus (bonobo/pygmy chimpanzee) : NPHP4 (nephrocystin 4)
Canis lupus familiaris (dog) : NPHP4 (nephrocystin 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nphp4 (nephrocystin 4)
Sus scrofa (pig) : NPHP4 (nephrocystin 4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05169,647,581 - 169,744,662 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05173,201,362 - 173,298,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,711,038 - 169,797,486 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5161,218,067 - 161,302,859 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Nphp4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560172
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.