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Gene: Slf2 (SMC5-SMC6 complex localization factor 2) Rattus norvegicus
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Symbol: Slf2
Name: SMC5-SMC6 complex localization factor 2
Description: Predicted to have ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including positive regulation of cellular component organization; positive regulation of double-strand break repair; and protein localization to site of double-strand break. Predicted to localize to the chromatin; nucleus; and site of double-strand break. Orthologous to human SLF2 (SMC5-SMC6 complex localization factor 2); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 3-methylcholanthrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Fam178a; family with sequence similarity 178, member A; hypothetical protein LOC499360; LOC499360; RGD1560300; similar to chromosome 10 open reading frame 6 ; SMC5-SMC6 complex localization factor protein 2; uncharacterized protein LOC499360
Orthologs:
Homo sapiens (human) : SLF2 (SMC5-SMC6 complex localization factor 2)  HGNC  Alliance
Mus musculus (house mouse) : Slf2 (SMC5-SMC6 complex localization factor 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slf2 (SMC5-SMC6 complex localization factor 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SLF2 (SMC5-SMC6 complex localization factor 2)
Canis lupus familiaris (dog) : SLF2 (SMC5-SMC6 complex localization factor 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slf2 (SMC5-SMC6 complex localization factor 2)
Sus scrofa (pig) : LOC110256637 (SMC5-SMC6 complex localization factor protein 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01264,670,836 - 264,733,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01272,112,614 - 272,175,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,986,434 - 250,048,899 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1239,594,279 - 239,656,726 (+)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slf2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560300
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.