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Gene: RGD1560436 (similar to hypothetical protein FLJ20508) Rattus norvegicus
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Symbol: RGD1560436
Name: similar to hypothetical protein FLJ20508
Description: Predicted to localize to cytosol; nucleolus; and nucleoplasm. Orthologous to human C1orf109 (chromosome 1 open reading frame 109); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); bortezomib (ortholog).
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC500546; LOC500546; uncharacterized protein C1orf109 homolog; uncharacterized protein LOC500546
Orthologs:
Homo sapiens (human) : C1orf109 (chromosome 1 open reading frame 109)  HGNC  Alliance
Mus musculus (house mouse) : 9930104L06Rik (RIKEN cDNA 9930104L06 gene)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102013140 (chromosome unknown open reading frame, human C1orf109)
Pan paniscus (bonobo/pygmy chimpanzee) : C1H1orf109 (chromosome 1 C1orf109 homolog)
Canis lupus familiaris (dog) : C15H1orf109 (chromosome 15 C1orf109 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : CUNH1orf109 (chromosome unknown C1orf109 homolog)
Sus scrofa (pig) : C6H1orf109 (chromosome 6 C1orf109 homolog)
Chlorocebus sabaeus (African green monkey) : C20H1orf109 (chromosome 20 open reading frame, human C1orf109)
Heterocephalus glaber (naked mole-rat) : CUNH1orf109 (chromosome unknown C1orf109 homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05142,933,619 - 142,940,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,933,619 - 142,938,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,702,472 - 146,717,119 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,276,540 - 144,281,846 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5135,716,897 - 135,722,203 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on RGD1560436
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560436
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.