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Gene: Atg9b (autophagy related 9B) Rattus norvegicus
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Symbol: Atg9b
Name: autophagy related 9B
CRRD ID: 1560887
Description: Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to localize to autophagosome and phagophore assembly site. Orthologous to human ATG9B (autophagy related 9B); PARTICIPATES IN autophagy pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATG9 autophagy related 9 homolog B; ATG9 autophagy related 9 homolog B (S. cerevisiae); autophagy-related protein 9B; LOC499973; RGD1560887; similar to autophagy 9-like 2
Orthologs:
Homo sapiens (human) : ATG9B (autophagy related 9B)  HGNC  Alliance
Mus musculus (house mouse) : Atg9b (autophagy related 9B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg9b (autophagy related 9B)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG9B (autophagy related 9B)
Canis lupus familiaris (dog) : ATG9B (autophagy related 9B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg9b (autophagy related 9B)
Sus scrofa (pig) : ATG9B (autophagy related 9B)
Chlorocebus sabaeus (African green monkey) : ATG9B (autophagy related 9B)
Heterocephalus glaber (naked mole-rat) : Atg9b (autophagy related 9B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.047,314,369 - 7,322,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,314,369 - 7,321,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,325,733 - 7,332,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,151,128 - 6,157,788 (+)NCBIRGSC3.4rn4RGSC3.4
Celera46,400,691 - 6,407,351 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Atg9b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560887
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.