Gene: Arid3c (AT-rich interaction domain 3C) Rattus norvegicus
Analyze
Symbol: Arid3c
Name: AT-rich interaction domain 3C
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific, RNA polymerase II proximal promoter sequence-specific DNA binding activity, and chromatin binding activity; predicted to be involved in positive regulation of transcription by RNA polymerase II; predicted to localize to the cytoplasm, membrane raft, and nucleus; orthologous to human ARID3C (AT-rich interaction domain 3C); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; arsane (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Also known as: AT rich interactive domain 3C (BRIGHT-like); AT-rich interactive domain-containing protein 3C; LOC502946; RGD1560943; similar to hypothetical LOC496519
Orthologs:
Homo sapiens (human) : ARID3C (AT-rich interaction domain 3C)  HGNC  Alliance
Mus musculus (house mouse) : Arid3c (AT rich interactive domain 3C (BRIGHT-like))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Arid3c (AT-rich interaction domain 3C)
Pan paniscus (bonobo/pygmy chimpanzee) : ARID3C (AT-rich interaction domain 3C)
Canis lupus familiaris (dog) : ARID3C (AT-rich interaction domain 3C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Arid3c (AT-rich interaction domain 3C)
Sus scrofa (pig) : ARID3C (AT-rich interaction domain 3C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0558,107,182 - 58,114,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0562,631,772 - 62,637,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,148,421 - 59,154,267 (-)NCBIRGSC3.4rn4RGSC3.4
Celera555,484,083 - 55,489,929 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Arid3c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560943
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.