Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Spocd1 (SPOC domain containing 1) Rattus norvegicus
Analyze
Symbol: Spocd1
Name: SPOC domain containing 1
Description: Predicted to be involved in negative regulation of phosphatase activity. Orthologous to human SPOCD1 (SPOC domain containing 1); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); 2,2',4,4'-Tetrabromodiphenyl ether (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC313060; RGD1560989; similar to SPOC domain containing 1; SPOC domain containing 1, pseudogene 1; SPOC domain-containing protein 1; Spocd1-ps1
Orthologs:
Homo sapiens (human) : SPOCD1 (SPOC domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Spocd1 (SPOC domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Spocd1 (SPOC domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SPOCD1 (SPOC domain containing 1)
Canis lupus familiaris (dog) : SPOCD1 (SPOC domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Spocd1 (SPOC domain containing 1)
Sus scrofa (pig) : SPOCD1 (SPOC domain containing 1)
Chlorocebus sabaeus (African green monkey) : SPOCD1 (SPOC domain containing 1)
Heterocephalus glaber (naked mole-rat) : Spocd1 (SPOC domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05148,138,309 - 148,166,567 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05151,863,962 - 151,886,106 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,970,198 - 148,979,672 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5140,738,589 - 140,766,618 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Spocd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1560989
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.