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Gene: Taf1 (TATA-box binding protein associated factor 1) Rattus norvegicus
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Symbol: Taf1
Name: TATA-box binding protein associated factor 1
Description: Predicted to contribute to H3K27me3 modified histone binding activity. Involved in response to drug. Localizes to the nucleus. Predicted to colocalize with the nucleolus. Human ortholog(s) of this gene implicated in X-linked dystonia-parkinsonism and syndromic X-linked intellectual disability. Orthologous to human TAF1 (TATA-box binding protein associated factor 1); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC317256; RGD1562050; similar to CCG1; TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor; transcription initiation factor TFIID subunit 1
Orthologs:
Homo sapiens (human) : TAF1 (TATA-box binding protein associated factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Taf1 (TATA-box binding protein associated factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Taf1 (TATA-box binding protein associated factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TAF1 (TATA-box binding protein associated factor 1)
Canis lupus familiaris (dog) : TAF1 (TATA-box binding protein associated factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Taf1 (TATA-box binding protein associated factor 1)
Sus scrofa (pig) : TAF1 (TATA-box binding protein associated factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X71,412,291 - 71,486,456 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X72,261,626 - 72,335,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,590,556 - 89,666,569 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX66,996,430 - 67,071,877 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Taf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1562050
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.