Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Otol1 (otolin 1) Rattus norvegicus
Symbol: Otol1
Name: otolin 1
Description: Predicted to have calcium ion binding activity and extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization; otolith mineralization; and protein homooligomerization. Predicted to localize to extracellular matrix and extracellular space. Orthologous to human OTOL1 (otolin 1); INTERACTS WITH bisphenol A; triclosan (ortholog); valproic acid (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC295117; otolin 1 homolog; otolin 1 homolog (zebrafish); otolin-1; RGD1562064; similar to hypothetical protein MGC48915
Homo sapiens (human) : OTOL1 (otolin 1)  HGNC  Alliance
Mus musculus (house mouse) : Otol1 (otolin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otol1 (otolin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : OTOL1 (otolin 1)
Canis lupus familiaris (dog) : OTOL1 (otolin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otol1 (otolin 1)
Sus scrofa (pig) : OTOL1 (otolin 1)
Chlorocebus sabaeus (African green monkey) : OTOL1 (otolin 1)
Heterocephalus glaber (naked mole-rat) : Otol1 (otolin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02166,845,543 - 166,866,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2166,856,784 - 166,866,195 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02186,225,575 - 186,235,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42160,168,553 - 160,177,964 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2148,648,967 - 148,669,913 (+)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Otol1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1562064
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.