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Gene: Scfd2 (sec1 family domain containing 2) Rattus norvegicus
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Symbol: Scfd2
Name: sec1 family domain containing 2
Description: Predicted to be involved in vesicle docking involved in exocytosis. Orthologous to human SCFD2 (sec1 family domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC498353; sec1 family domain-containing protein 2; similar to Sec1 family domain containing protein 2 (Syntaxin binding protein 1-like 1) (Neuronal Sec1)
Orthologs:
Homo sapiens (human) : SCFD2 (sec1 family domain containing 2)  HGNC  Alliance
Mus musculus (house mouse) : Scfd2 (Sec1 family domain containing 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scfd2 (sec1 family domain containing 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SCFD2 (sec1 family domain containing 2)
Canis lupus familiaris (dog) : SCFD2 (sec1 family domain containing 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scfd2 (sec1 family domain containing 2)
Sus scrofa (pig) : SCFD2 (sec1 family domain containing 2)
Chlorocebus sabaeus (African green monkey) : SCFD2 (sec1 family domain containing 2)
Heterocephalus glaber (naked mole-rat) : Scfd2 (sec1 family domain containing 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01436,216,002 - 36,543,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1436,216,002 - 36,543,658 (+)Ensembl
Rnor_5.01436,042,335 - 36,371,468 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41436,058,698 - 36,386,253 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1432,944,697 - 33,271,610 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Scfd2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1562708
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.