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Gene: Otoa (otoancorin) Rattus norvegicus
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Symbol: Otoa
Name: otoancorin
Description: Predicted to be involved in cell-matrix adhesion; sensory perception of sound; and transmission of nerve impulse. Predicted to localize to apical plasma membrane and cell surface. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 22. Orthologous to human OTOA (otoancorin); INTERACTS WITH atrazine; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC499260; RGD1562741; similar to otoancorin
Orthologs:
Homo sapiens (human) : OTOA (otoancorin)  HGNC  Alliance
Mus musculus (house mouse) : Otoa (otoancorin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otoa (otoancorin)
Pan paniscus (bonobo/pygmy chimpanzee) : OTOA (otoancorin)
Canis lupus familiaris (dog) : OTOA (otoancorin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otoa (otoancorin)
Sus scrofa (pig) : OTOA (otoancorin)
Chlorocebus sabaeus (African green monkey) : OTOA (otoancorin)
Heterocephalus glaber (naked mole-rat) : Otoa (otoancorin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01191,029,861 - 191,097,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1191,029,861 - 191,097,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01197,955,647 - 198,022,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41179,944,477 - 180,013,040 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1173,374,030 - 173,440,021 (+)NCBICelera
Cytogenetic Map1q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Otoa
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1562741
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.