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Gene: Ppef1 (protein phosphatase with EF-hand domain 1) Rattus norvegicus
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Symbol: Ppef1
Name: protein phosphatase with EF-hand domain 1
Description: Predicted to have protein serine/threonine phosphatase activity. Predicted to be involved in detection of stimulus involved in sensory perception and protein dephosphorylation. Predicted to localize to the cytosol and nucleus. Orthologous to human PPEF1 (protein phosphatase with EF-hand domain 1); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC317498; MGC125115; PPEF-1; protein phosphatase with EF hand calcium-binding domain 1; protein phosphatase, EF-hand calcium binding domain 1; serine/threonine-protein phosphatase with EF-hands 1; serine/threonine-protein phosphatase with EF-hands 1-like; similar to Serine/threonine protein phosphatase with EF-hands-1 (PPEF-1) (Protein phosphatase with EF calcium-binding domain) (PPEF) (Serine/threonine protein phosphatase 7) (PP7)
Orthologs:
Homo sapiens (human) : PPEF1 (protein phosphatase with EF-hand domain 1)  HGNC  Alliance
Mus musculus (house mouse) : Ppef1 (protein phosphatase with EF hand calcium-binding domain 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ppef1 (protein phosphatase with EF-hand domain 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PPEF1 (protein phosphatase with EF-hand domain 1)
Canis lupus familiaris (dog) : PPEF1 (protein phosphatase with EF-hand domain 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ppef1 (protein phosphatase with EF-hand domain 1)
Sus scrofa (pig) : PPEF1 (protein phosphatase with EF-hand domain 1)
Chlorocebus sabaeus (African green monkey) : PPEF1 (protein phosphatase with EF-hand domain 1)
Heterocephalus glaber (naked mole-rat) : Ppef1 (protein phosphatase with EF-hand domain 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly; Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X35,822,687 - 35,947,690 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX35,869,538 - 35,947,282 (+)Ensembl
Rnor_5.0X36,142,176 - 36,270,449 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X55,347,219 - 55,436,212 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX34,715,653 - 34,830,012 (+)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ppef1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1562772
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.