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Gene: Htatsf1 (HIV-1 Tat specific factor 1) Rattus norvegicus
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Symbol: Htatsf1
Name: HIV-1 Tat specific factor 1
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the U2 snRNP; U2-type spliceosomal complex; and nucleoplasm. Orthologous to human HTATSF1 (HIV-1 Tat specific factor 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: HIV TAT specific factor 1; HIV Tat-specific factor 1; LOC317612; RGD1563377; similar to HIV TAT specific factor 1
Orthologs:
Homo sapiens (human) : HTATSF1 (HIV-1 Tat specific factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Htatsf1 (HIV TAT specific factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Htatsf1 (HIV-1 Tat specific factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : HTATSF1 (HIV-1 Tat specific factor 1)
Canis lupus familiaris (dog) : HTATSF1 (HIV-1 Tat specific factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Htatsf1 (HIV-1 Tat specific factor 1)
Sus scrofa (pig) : HTATSF1 (HIV-1 Tat specific factor 1)
Chlorocebus sabaeus (African green monkey) : HTATSF1 (HIV-1 Tat specific factor 1)
Heterocephalus glaber (naked mole-rat) : Htatsf1 (HIV-1 Tat specific factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X159,514,053 - 159,528,281 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,513,800 - 159,528,281 (+)Ensembl
Rnor_5.0X154,143,843 - 154,158,071 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,697,471 - 141,711,652 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX142,977,478 - 142,991,659 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Htatsf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1563377
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.