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Gene: Nphp3 (nephrocystin 3) Rattus norvegicus
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Symbol: Nphp3
Name: nephrocystin 3
Description: Predicted to be involved in several processes, including animal organ development; determination of left/right symmetry; and non-motile cilium assembly. Predicted to localize to ciliary base and ciliary inversin compartment. Human ortholog(s) of this gene implicated in Meckel syndrome 7; Senior-Loken syndrome; nephronophthisis; nephronophthisis 3; and renal-hepatic-pancreatic dysplasia. Orthologous to human NPHP3 (nephrocystin 3); INTERACTS WITH bisphenol A; 3,4-methylenedioxymethamphetamine (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Also known as: LOC363126; nephrocystin-3; nephronophthisis 3 (adolescent); RGD1563856; similar to nephrocystin 3
Orthologs:
Homo sapiens (human) : NPHP3 (nephrocystin 3)  HGNC  Alliance
Mus musculus (house mouse) : Nphp3 (nephronophthisis 3 (adolescent))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nphp3 (nephrocystin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : NPHP3 (nephrocystin 3)
Canis lupus familiaris (dog) : NPHP3 (nephrocystin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nphp3 (nephrocystin 3)
Sus scrofa (pig) : NPHP3 (nephrocystin 3)
Chlorocebus sabaeus (African green monkey) : NPHP3 (nephrocystin 3)
Heterocephalus glaber (naked mole-rat) : Nphp3 (nephrocystin 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08112,526,553 - 112,575,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8112,526,553 - 112,575,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,913,834 - 111,963,488 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48109,065,400 - 109,105,882 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8103,986,600 - 104,026,761 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Nphp3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1563856
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.