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Gene: Ptchd1 (patched domain containing 1) Rattus norvegicus
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Symbol: Ptchd1
Name: patched domain containing 1
Description: Predicted to be involved in several processes, including smoothened signaling pathway; social behavior; and thalamus development. Predicted to localize to the plasma membrane. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human PTCHD1 (patched domain containing 1); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC317517; patched domain-containing protein 1; RGD1564527; similar to patched domain containing 1
Orthologs:
Homo sapiens (human) : PTCHD1 (patched domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Ptchd1 (patched domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ptchd1 (patched domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PTCHD1 (patched domain containing 1)
Canis lupus familiaris (dog) : PTCHD1 (patched domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ptchd1 (patched domain containing 1)
Sus scrofa (pig) : PTCHD1 (patched domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X42,558,912 - 42,610,430 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX42,558,931 - 42,614,242 (+)Ensembl
Rnor_5.0X42,866,040 - 42,917,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X61,079,670 - 61,131,155 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX40,277,508 - 40,329,013 (+)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ptchd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1564527
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.