Gene: Ubp1 (upstream binding protein 1) Rattus norvegicus
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Symbol: Ubp1
Name: upstream binding protein 1
Description: Predicted to have DNA-binding transcription factor activity and sequence-specific DNA binding activity; predicted to be involved in angiogenesis and regulation of transcription by RNA polymerase II; predicted to localize to the cytosol and nucleoplasm; orthologous to human UBP1 (upstream binding protein 1); INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC301038; RGD1564700; similar to CP2B; upstream binding protein 1 (LBP-1a); upstream-binding protein 1
Orthologs:
Homo sapiens (human) : UBP1 (upstream binding protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Ubp1 (upstream binding protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ubp1 (upstream binding protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : UBP1 (upstream binding protein 1)
Canis lupus familiaris (dog) : UBP1 (upstream binding protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ubp1 (upstream binding protein 1)
Sus scrofa (pig) : UBP1 (upstream binding protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ubp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1564700
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.