Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Synpo2 (synaptopodin 2) Rattus norvegicus
Analyze
Symbol: Synpo2
Name: synaptopodin 2
Description: Exhibits protein binding activity, bridging. Involved in autophagosome assembly and chaperone-mediated autophagy. Localizes to Z disc; nucleus; and stress fiber. Colocalizes with vesicle tethering complex. Orthologous to human SYNPO2 (synaptopodin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: INFERRED
Also known as: LOC499702; myopodin; RGD1564779; similar to Synaptopodin-2 (Myopodin); synaptopodin-2
Orthologs:
Homo sapiens (human) : SYNPO2 (synaptopodin 2)  HGNC  Alliance
Mus musculus (house mouse) : Synpo2 (synaptopodin 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Synpo2 (synaptopodin 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SYNPO2 (synaptopodin 2)
Canis lupus familiaris (dog) : SYNPO2 (synaptopodin 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Synpo2 (synaptopodin 2)
Sus scrofa (pig) : SYNPO2 (synaptopodin 2)
Chlorocebus sabaeus (African green monkey) : SYNPO2 (synaptopodin 2)
Heterocephalus glaber (naked mole-rat) : Synpo2 (synaptopodin 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02227,255,243 - 227,411,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,255,902 - 227,411,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,617,297 - 246,771,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,778,072 - 219,937,734 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2203,645,274 - 203,792,424 (-)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Synpo2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1564779
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.