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Gene: RGD1564887 (similar to 9130011E15Rik protein) Rattus norvegicus
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Symbol: RGD1564887
Name: similar to 9130011E15Rik protein
Description: INTERACTS WITH bisphenol A; decabromodiphenyl ether
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC499363; LOC499363; uncharacterized protein LOC499363; UPF0668 protein C10orf76 homolog
Orthologs:
No known orthologs. homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: RGD1564887 (GeneID: 499363) appears to be a duplicate placement of C1H10orf76 (GeneID: 103689959) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Additionally, gene neighbor LOC100911951 appears to be a duplicate placement of Kcnip2 (Gene ID: 56817). BLASTing RGD1564887 XM_008760484.1 and C1H10orf76 XM_001058595.3 against the rat genome shows best hits to NC_005100.4 on Rnor_6.0 at locations where RGD1564887 and C1H10orf76 are annotated and to AC_000069.1 on Rn_Celera only at location where C1H10orf76 is annotated (Annotation Release 105). 2-sequence BLAST of RGD1564887 XM_008760484.1 against C1H10orf76 XM_001058595.3 shows high sequence identity (81% coverage, 100% identity). BLASTing RGD1564887 underlying component AABR07006889.1 against the rat genome shows best hits to NC_005100.4 on Rnor_6.0 at the location where RGD1564887 is annotated (hitting itself) and the location where C1H10orf76 is annotated. 2-sequence BLAST of RGD1564887 underlying component AABR07006889.1 against C1H10orf76 underlying component AC093941.13 shows 99% sequence identity across ~44 kb. [26 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01262,861,241 - 262,891,231 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01273,005,013 - 273,187,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01270,306,385 - 270,336,407 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,033,778 - 251,221,696 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1240,473,652 - 240,655,286 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
References - curated

Genomics

Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on RGD1564887
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1564887
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.