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Gene: Shroom2 (shroom family member 2) Rattus norvegicus
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Symbol: Shroom2
Name: shroom family member 2
Description: Predicted to have actin filament binding activity; beta-catenin binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including cell-cell junction maintenance; melanosome organization; and negative regulation of actin filament depolymerization. Predicted to localize to several cellular components, including adherens junction; apical plasma membrane; and bicellular tight junction. Orthologous to human SHROOM2 (shroom family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ab2-404; apical protein-like; apical protein-like (Xenopus laevis); Apxl; liver regeneration-related protein LRRG167; LOC317435; similar to apical protein, Xenopus laevis-like
Orthologs:
Homo sapiens (human) : SHROOM2 (shroom family member 2)  HGNC  Alliance
Mus musculus (house mouse) : Shroom2 (shroom family member 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shroom2 (shroom family member 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SHROOM2 (shroom family member 2)
Canis lupus familiaris (dog) : SHROOM2 (shroom family member 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shroom2 (shroom family member 2)
Sus scrofa (pig) : SHROOM2 (shroom family member 2)
Chlorocebus sabaeus (African green monkey) : SHROOM2 (shroom family member 2)
Heterocephalus glaber (naked mole-rat) : Shroom2 (shroom family member 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X23,478,869 - 23,649,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX23,478,871 - 23,649,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X23,895,809 - 24,066,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X42,290,709 - 42,462,067 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX22,219,215 - 22,383,703 (-)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Shroom2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565163
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.