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Gene: Pax5 (paired box 5) Rattus norvegicus
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Symbol: Pax5
Name: paired box 5
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Predicted to be involved in several processes, including aging; animal organ development; and regulation of transcription by RNA polymerase II. Predicted to localize to the cytosol; fibrillar center; and nucleoplasm. Human ortholog(s) of this gene implicated in precursor lymphoblastic lymphoma/leukemia. Orthologous to human PAX5 (paired box 5); INTERACTS WITH (RS)-amphetamine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC500453; LOC500453; paired box protein Pax-5; RGD1565236; similar to transcription factor; uncharacterized protein LOC500453
Orthologs:
Homo sapiens (human) : PAX5 (paired box 5)  HGNC  Alliance
Mus musculus (house mouse) : Pax5 (paired box 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pax5 (paired box 5)
Pan paniscus (bonobo/pygmy chimpanzee) : PAX5 (paired box 5)
Canis lupus familiaris (dog) : PAX5 (paired box 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pax5 (paired box 5)
Sus scrofa (pig) : PAX5 (paired box 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0560,007,587 - 60,191,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0564,530,218 - 64,707,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,016,708 - 61,131,315 (-)NCBIRGSC3.4rn4RGSC3.4
Celera557,341,131 - 57,518,116 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pax5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565236
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.