Gene: Col6a1 (collagen type VI alpha 1 chain) Rattus norvegicus
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Symbol: Col6a1
Name: collagen type VI alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent and platelet-derived growth factor binding activity; predicted to be involved in several processes, including cellular response to amino acid stimulus, endodermal cell differentiation, and extracellular matrix organization; predicted to localize to several cellular components, including the extracellular matrix, extracellular space, and protein-containing complex; used to study muscular disease; orthologous to human COL6A1 (collagen type VI alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-naphthyl isothiocyanate; 2,2,2-tetramine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(VI) chain; collagen, type VI, alpha 1; LOC294337; procollagen, type VI, alpha 1; RGD1565398; similar to collagen alpha1 type VI-precursor
Orthologs:
Homo sapiens (human) : COL6A1 (collagen type VI alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col6a1 (collagen, type VI, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col6a1 (collagen type VI alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL6A1 (collagen type VI alpha 1 chain)
Canis lupus familiaris (dog) : COL6A1 (collagen type VI alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col6a1 (collagen type VI alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02012,657,913 - 12,676,370 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02014,817,411 - 14,835,868 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,320,102 - 12,338,500 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2013,404,454 - 13,422,911 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col6a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565398
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.