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Gene: Col4a5 (collagen type IV alpha 5 chain) Rattus norvegicus
Symbol: Col4a5
Name: collagen type IV alpha 5 chain
CRRD ID: 1565499
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway; extracellular matrix organization; and neuromuscular junction development. Predicted to localize to collagen type IV trimer; extracellular space; and neuromuscular junction. Human ortholog(s) of this gene implicated in Alport syndrome and X-linked Alport syndrome. Orthologous to human COL4A5 (collagen type IV alpha 5 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-5(IV) chain; collagen, type IV, alpha 5; LOC363457; procollagen, type IV, alpha 5; RGD1565499; similar to type IV collagen alpha 5 chain
Homo sapiens (human) : COL4A5 (collagen type IV alpha 5 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col4a5 (collagen, type IV, alpha 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col4a5 (collagen type IV alpha 5 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL4A5 (collagen type IV alpha 5 chain)
Canis lupus familiaris (dog) : COL4A5 (collagen type IV alpha 5 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col4a5 (collagen type IV alpha 5 chain)
Sus scrofa (pig) : COL4A5 (collagen type IV alpha 5 chain)
Chlorocebus sabaeus (African green monkey) : COL4A5 (collagen type IV alpha 5 chain)
Heterocephalus glaber (naked mole-rat) : Col4a5 (collagen type IV alpha 5 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0X112,769,595 - 112,983,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX112,769,645 - 112,983,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X111,226,503 - 111,437,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,918,697 - 37,130,659 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX104,529,279 - 104,731,865 (+)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Col4a5
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565499
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.