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Gene: Depp1 (DEPP1, autophagy regulator) Rattus norvegicus
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Symbol: Depp1
Name: DEPP1, autophagy regulator
Description: Predicted to be involved in regulation of autophagy. Predicted to localize to the mitochondrion and peroxisome. Orthologous to human DEPP1 (DEPP1 autophagy regulator); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: decidual protein induced by progesterone; Depp; LOC500300; similar to hypothetical protein MGC6835
Orthologs:
Homo sapiens (human) : DEPP1 (DEPP1 autophagy regulator)  HGNC  Alliance
Mus musculus (house mouse) : Depp1 (DEPP1 autophagy regulator)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Depp1 (DEPP1 autophagy regulator)
Pan paniscus (bonobo/pygmy chimpanzee) : DEPP1 (DEPP1 autophagy regulator)
Canis lupus familiaris (dog) : DEPP1 (DEPP1 autophagy regulator)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Depp1 (DEPP1 autophagy regulator)
Sus scrofa (pig) : DEPP1 (DEPP1 autophagy regulator)
Chlorocebus sabaeus (green monkey) : DEPP1 (DEPP1 autophagy regulator)
Heterocephalus glaber (naked mole-rat) : Depp1 (DEPP1 autophagy regulator)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04148,780,330 - 148,784,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,782,479 - 148,784,562 (+)Ensembl
Rnor_5.04214,721,136 - 214,723,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44153,000,782 - 153,002,562 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4138,786,484 - 138,788,568 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Depp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565700
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.