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Gene: Csmd2 (CUB and Sushi multiple domains 2) Rattus norvegicus
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Symbol: Csmd2
Name: CUB and Sushi multiple domains 2
Description: Predicted to localize to integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; valproic acid; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: CUB and sushi domain-containing protein 2; LOC313040; LOW QUALITY PROTEIN: CUB and sushi domain-containing protein 2; RGD1565728; similar to CUB and Sushi multiple domains 2
Orthologs:
Homo sapiens (human) : CSMD2 (CUB and Sushi multiple domains 2)  HGNC  Alliance
Mus musculus (house mouse) : Csmd2 (CUB and Sushi multiple domains 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Csmd2 (CUB and Sushi multiple domains 2)
Pan paniscus (bonobo/pygmy chimpanzee) : CSMD2 (CUB and Sushi multiple domains 2)
Canis lupus familiaris (dog) : CSMD2 (CUB and Sushi multiple domains 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Csmd2 (CUB and Sushi multiple domains 2)
Sus scrofa (pig) : CSMD2 (CUB and Sushi multiple domains 2)
Chlorocebus sabaeus (African green monkey) : CSMD2 (CUB and Sushi multiple domains 2)
Heterocephalus glaber (naked mole-rat) : Csmd2 (CUB and Sushi multiple domains 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05146,091,167 - 146,743,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5146,383,942 - 146,739,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05150,125,998 - 150,480,769 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45147,393,098 - 147,789,300 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5138,832,888 - 139,396,715 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Csmd2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565728
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.