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Gene: Ssc5d (scavenger receptor cysteine rich family member with 5 domains) Rattus norvegicus
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Symbol: Ssc5d
Name: scavenger receptor cysteine rich family member with 5 domains
Description: Predicted to have fibronectin binding activity; laminin binding activity; and scavenger receptor activity. Predicted to be involved in negative regulation of interleukin-8 secretion and response to bacterium. Predicted to localize to the collagen-containing extracellular matrix; external side of plasma membrane; and extracellular space. Orthologous to human SSC5D (scavenger receptor cysteine rich family member with 5 domains); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC308341; LOC308341; RGD1565772; scavenger receptor cysteine rich domain containing (5 domains); scavenger receptor cysteine rich family, 5 domains; similar to hypothetical protein A430110N23; soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0172,443,750 - 72,462,293 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0176,073,784 - 76,092,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,630,584 - 67,648,373 (-)NCBIRGSC3.4rn4RGSC3.4
Celera168,209,472 - 68,227,251 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ssc5d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1565772
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.