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Gene: Tctn1 (tectonic family member 1) Rattus norvegicus
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Symbol: Tctn1
Name: tectonic family member 1
Description: Predicted to be involved in several processes, including nervous system development; protein localization to ciliary transition zone; and regulation of smoothened signaling pathway. Predicted to localize to MKS complex; extracellular space; and membrane. Human ortholog(s) of this gene implicated in Joubert syndrome 13. Orthologous to human TCTN1 (tectonic family member 1); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC304486; RGD1566266; similar to hypothetical protein FLJ21127; tectonic-1
Orthologs:
Homo sapiens (human) : TCTN1 (tectonic family member 1)  HGNC  Alliance
Mus musculus (house mouse) : Tctn1 (tectonic family member 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tctn1 (tectonic family member 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TCTN1 (tectonic family member 1)
Canis lupus familiaris (dog) : TCTN1 (tectonic family member 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tctn1 (tectonic family member 1)
Sus scrofa (pig) : TCTN1 (tectonic family member 1)
Chlorocebus sabaeus (African green monkey) : TCTN1 (tectonic family member 1)
Heterocephalus glaber (naked mole-rat) : Tctn1 (tectonic family member 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01239,790,948 - 39,828,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,790,965 - 39,824,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,671,666 - 41,704,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,505,936 - 35,538,060 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1235,981,033 - 36,014,248 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Tctn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1566266
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.