Gene: Chd5 (chromodomain helicase DNA binding protein 5) Rattus norvegicus
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Symbol: Chd5
Name: chromodomain helicase DNA binding protein 5
Description: Exhibits chromatin binding activity; involved in transcription by RNA polymerase II; localizes to the nucleus; colocalizes with the chromatin; orthologous to human CHD5 (chromodomain helicase DNA binding protein 5); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH bisphenol A; cyclophosphamide; valproic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ATP-dependent helicase CHD5; CHD-5; chromodomain-helicase-DNA-binding protein 5; LOC691589; similar to chromodomain helicase DNA binding protein 5
Orthologs:
Homo sapiens (human) : CHD5 (chromodomain helicase DNA binding protein 5)  HGNC  Alliance
Mus musculus (house mouse) : Chd5 (chromodomain helicase DNA binding protein 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Chd5 (chromodomain helicase DNA binding protein 5)
Pan paniscus (bonobo/pygmy chimpanzee) : CHD5 (chromodomain helicase DNA binding protein 5)
Canis lupus familiaris (dog) : CHD5 (chromodomain helicase DNA binding protein 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Chd5 (chromodomain helicase DNA binding protein 5)
Sus scrofa (pig) : CHD5 (chromodomain helicase DNA binding protein 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05169,519,212 - 169,572,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05173,072,537 - 173,124,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,570,804 - 169,616,812 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5161,089,207 - 161,126,951 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Chd5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1582725
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.