Gene: U2af1 (U2 small nuclear RNA auxiliary factor 1) Rattus norvegicus
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Symbol: U2af1
Name: U2 small nuclear RNA auxiliary factor 1
Description: Predicted to have RS domain binding activity and pre-mRNA 3'-splice site binding activity; predicted to be involved in mRNA splicing, via spliceosome; predicted to localize to the U2AF, catalytic step 2 spliceosome, and nuclear speck; orthologous to several human genes including U2AF1L5 (U2 small nuclear RNA auxiliary factor 1 like 5); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC687575; LOC687575; similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxiliary factor small subunit); splicing factor U2AF 35 kDa subunit; uncharacterized protein LOC687575
Orthologs:
Homo sapiens (human) : U2AF1 (U2 small nuclear RNA auxiliary factor 1)  HGNC  Alliance
Mus musculus (house mouse) : U2af1 (U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : U2af1 (U2 small nuclear RNA auxiliary factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : U2AF1 (U2 small nuclear RNA auxiliary factor 1)
Canis lupus familiaris (dog) : U2AF1 (U2 small nuclear RNA auxiliary factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : U2af1 (U2 small nuclear RNA auxiliary factor 1)
Sus scrofa (pig) : U2AF1 (U2 small nuclear RNA auxiliary factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02010,396,652 - 10,407,564 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02012,582,585 - 12,593,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2011,256,755 - 11,267,643 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on U2af1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1584190
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.