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Gene: Smg5 (SMG5 nonsense mediated mRNA decay factor) Rattus norvegicus
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Symbol: Smg5
Name: SMG5 nonsense mediated mRNA decay factor
Description: Predicted to have enzyme binding activity and nucleic acid binding activity. Predicted to be involved in regulation of dephosphorylation; regulation of telomere maintenance via telomerase; and telomere maintenance via telomerase. Predicted to localize to cytoplasm and telomerase holoenzyme complex. Orthologous to human SMG5 (SMG5 nonsense mediated mRNA decay factor); PARTICIPATES IN mRNA decay pathway; INTERACTS WITH bisphenol A; thioacetamide; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC681012; similar to Est1p-like protein B; Smg-5 homolog, nonsense mediated mRNA decay factor; Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Orthologs:
Homo sapiens (human) : SMG5 (SMG5 nonsense mediated mRNA decay factor)  HGNC  Alliance
Mus musculus (house mouse) : Smg5 (Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Smg5 (SMG5 nonsense mediated mRNA decay factor)
Pan paniscus (bonobo/pygmy chimpanzee) : SMG5 (SMG5 nonsense mediated mRNA decay factor)
Canis lupus familiaris (dog) : SMG5 (SMG5 nonsense mediated mRNA decay factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Smg5 (SMG5 nonsense mediated mRNA decay factor)
Sus scrofa (pig) : SMG5 (SMG5 nonsense mediated mRNA decay factor)
Chlorocebus sabaeus (African green monkey) : SMG5 (SMG5 nonsense mediated mRNA decay factor)
Heterocephalus glaber (naked mole-rat) : Smg5 (SMG5 nonsense mediated mRNA decay factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02187,708,247 - 187,735,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,708,234 - 187,735,355 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,110,275 - 207,138,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,448,782 - 180,475,237 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2167,749,851 - 167,776,844 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smg5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1584731
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.